Sequence of DPV Ligustrum necrotic ringspot virus
Ligustrum necrotic ringspot virus replicase polyprotein gene, partial cds; and triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, coat protein, and putative nucleotide binding protein genes, complete cds.
ACC No: GQ411367
Dated: 2009-09-09 | Length: 3130 | CRC: -276037014
ID GQ411367; SV 1; linear; genomic RNA; STD; VRL; 3130 BP.
XX
AC GQ411367;
XX
DT 09-SEP-2009 (Rel. 102, Created)
DT 09-SEP-2009 (Rel. 102, Last updated, Version 1)
XX
DE Ligustrum necrotic ringspot virus replicase polyprotein gene, partial cds;
DE and triple gene block protein 1, triple gene block protein 2, triple gene
DE block protein 3, coat protein, and putative nucleotide binding protein
DE genes, complete cds.
XX
KW .
XX
OS Ligustrum necrotic ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Carlavirus; unclassified Carlavirus.
XX
RN [1]
RP 1-3130
RA Harper S.J., Tang J., Clover G.R.G.;
RT "New record of LNRsV in Impatiens in New Zealand";
RL Unpublished.
XX
RN [2]
RP 1-3130
RA Harper S.J., Tang J., Clover G.R.G.;
RT ;
RL Submitted (23-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL IDC-PHEL, MAF Biosecurity NZ, 231 Morrin Road, Auckland 1010, New Zealand
XX
FH Key Location/Qualifiers
FH
FT source 1. .3130
FT /organism="Ligustrum necrotic ringspot virus"
FT /host="Impatiens sp."
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /collection_date="17-Mar-2009"
FT /db_xref="taxon:478550"
FT CDS <1. .629
FT /codon_start=3
FT /product="replicase polyprotein"
FT /protein_id="ACV31388.1"
FT /translation="DASQDQYIVAFEVNVMRFLGIPNDVINDYVFIKTHLGSKLGNFSI
FT MRFSGEASTFLFNTMANMLFTFLRYSIKGNEYICFAGDDMCANTKLHVSKEHESFLSKL
FT KLKAKVDNTNHPTFCGWNLSTHGIFKKPQLVFERLCIAKETNNLSNCIDNYAIEVSFAY
FT KMGELAIQQMNEEEVEAFYNCVRVIIKYKHLLKSDVVNVFSNGLM"
FT CDS 661. .1344
FT /codon_start=1
FT /product="triple gene block protein 1"
FT /protein_id="ACV31389.1"
FT /translation="MDVLVSVLAKYKFERLSCSISPPIVVHSVPGAGKSSLIREIIQKD
FT SRFQAYTYGEADPEHLSEFGIQKFSESLSGEFILLDEYLGGPVPDGVFAVFADPLQGGP
FT GRPLRAHFIKKVSHRFGRATAQLLRDLNFEVEATNDDVVQVSGLYETDPRDTIIYCETE
FT IGNLLKAHSVEAYCVSEIRGKTFESVTFVTSENSPRDRALAFQCLTRHRKSLLILCPDA
FT SYSSC"
FT CDS 1322. .1642
FT /codon_start=1
FT /product="triple gene block protein 2"
FT /protein_id="ACV31390.1"
FT /translation="MPLTPPANYIQVYVSAAIGVSLALIVGLATRNTLPIVGDLQHNLP
FT HGGRYRDGTKSVDYFKPCKLNSVEGGSSWVSQPWLLVILLVAAVILLSKKPNYCGTCGR
FT VH"
FT CDS 1624. .1815
FT /codon_start=1
FT /product="triple gene block protein 3"
FT /protein_id="ACV31391.1"
FT /translation="MRQGALNFCVVLLSFLGVYLLMTKTKTLCSIIISGESITVSGSEL
FT TAEIVQAISQLRVQKLDL"
FT CDS 1857. .2762
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACV31392.1"
FT /translation="MPQKEAPSQTEVPPTTLPPPPVTPVTTPPPRERREERGEPSTVSG
FT EEPQLELRFQRLIELLSGQRHNSNLKNMAFEIGVVSLEPTPEMKRNPANPYGRSSIDEL
FT FRIKPKLVSNNMATTEQMAKIVSAIAGLGVPTEQVSAVILQTVIQCSSYSSSTFLDPDG
FT SVEFEGGAVPLDAIVAIMKRDSTLRKVCRLYAPVVWNYMLVKDQPPSDWQAMGFQWNTR
FT FAAFDFFDYVENQAAVQPVEGLIRRPTSAEKIAHATHRQLALDRSNRNEKFGSLEPEVT
FT GGLQGTEIVRNHRNAANGNA"
FT CDS 2623. .3060
FT /codon_start=1
FT /product="putative nucleotide binding protein"
FT /protein_id="ACV31393.1"
FT /translation="MRRTGSLLWTDRTGMRNSGAWSPRSLADFKEPKLSAITGMPLMEM
FT HERRRLAALFTVCNYLNKDIRALCPEIINRSPGLVLGSGKSSYARRRRAKSIGRCERCY
FT RVYPPICNSKCDNTTCVPGISPNQDVVNYIKHGVTEVIPRF"
XX
SQ Sequence 3130 BP; 868 A; 695 C; 756 G; 811 T; 0 other;
gq411367 Length: 3130 09-SEP-2009 Type: N Check: 8924 ..
1 ttgatgcaag tcaagaccaa tatattgtgg cctttgaggt gaatgtgatg
51 cgttttcttg gcatcccgaa cgacgtgatc aatgattacg tatttatcaa
101 aacgcactta ggctcgaaac tggggaattt ctccatcatg aggttttcag
151 gtgaagcgag taccttcctc ttcaacacaa tggcaaacat gcttttcact
201 tttctgaggt acagcattaa aggtaatgag tacatatgtt ttgctggtga
251 tgatatgtgc gcgaatacca agttgcatgt ttcaaaagag catgaaagct
301 ttctgagcaa attgaagctg aaagcaaaag tggacaacac caatcaccca
351 acattctgcg ggtggaacct cagtacacat ggcatcttca agaaaccaca
401 gttagtgttt gagaggttgt gcattgccaa agagactaat aatcttagta
451 attgcataga taactacgcc attgaagttt cctttgcata caagatgggt
501 gagttggcaa tccaacaaat gaatgaggag gaggtggaag ccttttacaa
551 ctgcgtacgt gtgatcatca agtacaaaca tctcctcaag tcagacgtgg
601 ttaatgtctt ttcaaacggt ttgatgtaat agctttggta agcgctagtt
651 tagattgtat atggatgtgt tagtaagtgt gttagctaaa tataaatttg
701 agcgtttaag ttgtagcatt agccctccta ttgttgttca tagtgtccca
751 ggcgcaggca agtcaagctt aatcagggaa attattcaaa aagacagccg
801 cttccaggca tatacatacg gcgaggctga tcctgagcat ttgtcagagt
851 tcggaattca gaagttcagc gaatctctgt cgggggagtt catcttgcta
901 gacgagtacc ttggcggccc ggtgcccgac ggtgtttttg cagtctttgc
951 cgacccgttg cagggtggcc ctggcaggcc acttagggcc catttcatta
1001 agaaggtctc tcacagattt ggcagagcaa ctgcacagct actccgcgat
1051 ttaaattttg aggtggaagc cacaaacgat gatgtcgtac aagtgagcgg
1101 gctttatgag acagacccca gagatactat catttattgt gaaacagaga
1151 tcgggaattt actcaaagcg catagtgtcg aagcctattg tgtcagcgaa
1201 atcagaggga aaactttcga gagtgtgacc ttcgtaacat cagagaactc
1251 tcctagagac agagctttgg ctttccagtg cttaactagg caccgcaaat
1301 ccctgctgat cctgtgccct gatgcctctt actcctcctg ctaattacat
1351 tcaggtgtat gtttccgcgg caattggggt ttcgcttgca ctcatcgtgg
1401 gtcttgccac gagaaataca ctccccattg tgggcgacct gcaacataac
1451 ctgccacacg gtggtagata ccgagacggt accaaatctg tggactattt
1501 caaaccttgc aagctcaatt ctgtcgaagg tggttcgtcc tgggtcagcc
1551 agccgtggtt gctggtcata cttttggtcg cagcggtcat tctactcagt
1601 aagaaaccca actattgcgg cacatgcggc agggtgcact gaacttttgt
1651 gttgtgctat tgagtttctt aggtgtgtat ctattgatga cgaaaacgaa
1701 aacgctttgc tcaatcataa tttcaggaga atcgatcacc gtttctgggt
1751 ccgaattgac cgcagagatt gtccaagcaa tatcacaatt gagggtgcag
1801 aagttggacc tttaggttta caggtagatg atcgttattc atacatactt
1851 atcaagatgc cccaaaagga agcaccctca caaacagagg taccaccaac
1901 tacactgcca ccgccacccg tgacaccggt caccacaccc ccgccacgcg
1951 aacgcaggga ggaaagaggc gaacctagca cagtttcagg tgaggagcca
2001 caactggaat tgaggttcca aagactgata gaactcttgt cagggcagag
2051 gcacaactcg aatttgaaga atatggcatt tgagataggc gttgtctcct
2101 tagaacccac tcctgagatg aagcggaatc ctgcgaaccc atacggccgt
2151 tcttctatcg atgaactgtt ccgtatcaag ccgaagcttg tctcaaataa
2201 tatggcaact acagaacaaa tggctaagat tgtgagtgca atcgcagggc
2251 taggtgtacc cacagaacaa gtctccgctg tcatcctaca aacggtgata
2301 caatgctcta gctacagtag ctccaccttt cttgatccag atgggagcgt
2351 tgaatttgaa gggggcgcag tgcccctcga cgccatcgta gcaattatga
2401 agcgtgactc cacgctgaga aaggtttgca ggttgtacgc tccagtggtt
2451 tggaactata tgctggtgaa agaccaacct ccatcagact ggcaagctat
2501 gggattccaa tggaacacac gattcgccgc tttcgacttc tttgactatg
2551 tcgaaaatca ggctgcagta caacccgttg aggggttaat aaggaggccg
2601 acttccgctg agaagattgc acatgcgacg cacaggcagc ttgctctgga
2651 cagatcgaac cggaatgaga aattcgggag cttggagccc gaggtcactg
2701 gcggacttca aggaaccgaa attgtccgca atcacaggaa tgccgctaat
2751 ggaaatgcat gaacgacgca gattagctgc tttatttacc gtgtgcaatt
2801 atttaaataa agatattagg gctctatgcc ccgaaataat aaaccgctca
2851 cctggcttag tgctaggttc tggcaaatct agttacgcta gacgacgcag
2901 ggccaagagc atagggcgat gtgaacggtg ttatcgtgtg taccccccca
2951 tatgtaatag taagtgtgat aatactacat gtgtgccagg tatttcaccc
3001 aatcaagacg ttgtcaacta catcaagcac ggagtaactg aggtgatacc
3051 gcgcttctga gttctgccta agacctaaat aatattaagg gtgaaactat
3101 aaaaataatt tgtttttaaa ctattttagc