Sequence of DPV Southern rice black-streaked dwarf virus

Southern rice black-streaked dwarf virus isolate Jni4 segment S10, complete sequence.

ACC No: GQ472845

Dated: 2012-12-31 | Length: 1798 | CRC: -2127699176

                
ID   GQ472845; SV 1; linear; genomic RNA; STD; VRL; 1798 BP.
XX
AC   GQ472845;
XX
DT   31-DEC-2012 (Rel. 115, Created)
DT   31-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate Jni4 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   unclassified Fijivirus.
XX
RN   [1]
RP   1-1798
RA   Zhu Q., Yin X., Li X.;
RT   "Southern rice black-streaked dwarf virus isolate Jni4 segment S10";
RL   Unpublished.
XX
RN   [2]
RP   1-1798
RA   Zhu Q., Yin X., Li X.;
RT   ;
RL   Submitted (11-AUG-2009) to the INSDC.
RL   Dept. of Plant Pathology, College of Plant Protection, Shandong
RL   Agricultural University, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1798
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="Jni4"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Ji'ning, Shandong"
FT                   /db_xref="taxon:519497"
FT   5'UTR           1. .21
FT   CDS             22. .1695
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /protein_id="ADG59722.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNPSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELSALDADK
FT                   SLLEQTWSGVSSFIETWKVKTKAKDEDQDEYELAGLSALRKGVDGNSVSSPYNDKKFIE
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRLIKKATTANSSTSNSNSEHGQKIVLNKVTR"
FT   3'UTR           1696. .1798
XX
SQ   Sequence 1798 BP; 614 A; 327 C; 317 G; 540 T; 0 other;

gq472845 Length: 1798  31-DEC-2012  Type: N  Check: 7087  ..

       1  aagttttttt cctcacccat aatggctgac ataagacttg acatagcgcc
      51  cgatcttatc cataatggtg tgcctcaaag actttcagat acgataattc
     101  taaacaaccg accaacaatc acacttctgt ctcacttcaa ctctcttttt
     151  cacgaatcaa atattgttaa atcaccccac atcgcgtcat ctcaaactac
     201  agttaattta tacattcgta agcatttact gactcgactt catgatagat
     251  tacaaactgt cgaaaccagt actctaccga acattactca acttaaagaa
     301  catattcaaa gttatttccg caatgaacat caacctattt ttcaaaccct
     351  gactaacaat aatcctagtg atgaattttt aggtgtaact acttttggtt
     401  taagtttatt cgcaacttcg aagttggatg cagaacaaat agaacgagta
     451  caaattgaga ccctaactga aggaaacgtt acacttaaac cattctccgc
     501  tgacggttta gaagtaattt tagatgatag ctacatcgga ataattggaa
     551  aaatttctgg tttagaagta cataaattgc ttgataaatg ttgtcgtgaa
     601  gttcctgctc aaatgggaat attaactgac gaagttaaac ttttaatacg
     651  ttccggaaaa ttaagaattg acggtggata cgatttcaat tgtcctgcta
     701  gtacaacaga cgtgacacac tatggcggtt acgaccaata ttcgagacaa
     751  atgtttgaaa aattgaattt gttctttaac atcagtttga gcattattcc
     801  tgtttctgca cttaaaacta ttcatgtatt tgagaaagaa ctaagcgctt
     851  tagatgctga caaatcactt ttagaacaaa catggagcgg agtctcctca
     901  tttattgaaa cctggaaagt aaaaactaaa gctaaagatg aagatcaaga
     951  tgagtacgaa ctagctggac tgtccgcact tagaaaagga gtcgatggca
    1001  attctgtatc tagcccttac aatgataaga agttcatcga atggtattcc
    1051  aagacgtttg ctaaaataga gaaaggttca tcgttgcgta agaccgaaat
    1101  tgaagacaaa aatacatccg gcacctcaaa cataacaaag caagttaaaa
    1151  ttcattttcc tgttcagtat ttcgatgaag tcaaatctaa cggtcatgaa
    1201  aaaagtgtta ctgtaatcac taataaaggt gaaatgtcat tggaatctta
    1251  ccgaaagata ggtgaaatat taagtgcgat ctggaaacgt ggtaaggcat
    1301  tagctgctcc ctgcatcgat tacatcaaac ttggcgtcga aaaagcttat
    1351  catttagctc ctgtaatcat gaagaaatat aatttaacta ttgatgatat
    1401  aattcatttt attgaaattg gtccttcata cttagcgaaa ttggataaaa
    1451  ttgatgattg gtccttaatt gcaaaattga ttattaccag tgttttgcca
    1501  aatatcattc aagcggtgta taaaacagat cctagcaata atgttatgaa
    1551  ttcagttatt attagcagag ccaacaattt attgaaggcg gatcgcgatc
    1601  gtctaattaa gaaagctacc actgcaaatt catctaccag taattcaaat
    1651  tcagaacatg gtcaaaagat tgtgttaaat aaagtcacca gatgataatt
    1701  gaggtttcat cattagcgcg actagttcag tgctgtgtgg tcttcagttc
    1751  attatcgacg ccgagtgacg acggctaggg ggaaattcag ctattgtc