Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 294-OYDV6 polyprotein gene, partial cds.

ACC No: GQ475362

Dated: 2013-02-15 | Length: 775 | CRC: -462688476

                
ID   GQ475362; SV 1; linear; genomic RNA; STD; VRL; 775 BP.
XX
AC   GQ475362;
XX
DT   13-SEP-2010 (Rel. 106, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
XX
DE   Onion yellow dwarf virus isolate 294-OYDV6 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-775
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
XX
RN   [2]
RP   1-775
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .775
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="294-OYDV6"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>775
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E0X530"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E0X530"
FT                   /protein_id="ADM89558.1"
FT                   /translation="AGEGEDAVPKEVRYQAGEGEDAAAQSNTPKQIAKQKDKDVDTGTT
FT                   GKFTIPRIKALSDKMRFPKVGKIVVLNAEHLLEYKPDQTELYNTRSTKNQFENWYNAVK
FT                   KEYDVNDEQMKILLNGLMVWCIENGTSPNLSGNWTMMDDEEQVEYPLAPVLDNAKPTFR
FT                   QIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNITELSLARYASDFYEMTSKTPKRAKEA
FT                   HMQMKAAAIRGATNRLFGLDGNVNTTEEDTERHTAA"
XX
SQ   Sequence 775 BP; 283 A; 134 C; 186 G; 172 T; 0 other;

gq475362 Length: 775  15-FEB-2013  Type: N  Check: 9112  ..

       1  gcgggggaag gagaagatgc agtccctaag gaagttcgtt atcaagctgg
      51  agagggggaa gacgcagcag cacaatcaaa cacaccaaag caaattgcaa
     101  agcagaaaga taaagatgtt gacactggta caactggtaa gttcacaatc
     151  cctagaatta aagctctatc agataaaatg aggtttccaa aagttggaaa
     201  aattgttgta cttaatgcag agcacttgtt ggaatacaag ccagatcaaa
     251  ccgaactgta taatacaaga tcaacaaaga atcagtttga gaattggtat
     301  aatgcggtga agaaagagta cgacgtcaac gatgagcaaa tgaaaatatt
     351  actaaatggt ttaatggttt ggtgtattga aaatggaaca tctcctaatt
     401  tatcgggaaa ctggactatg atggatgatg aagagcaggt tgaatatcca
     451  ttggcgccag tgctggataa cgcgaaacca acttttagac aaataatggc
     501  acatttcagt gatgcagctg aagcatacat tgaatataga aatgccacag
     551  aaaaatacat gccccggtat ggacttcagc gcaatataac agaacttagt
     601  ttggcacgtt acgcatccga tttttatgag atgacttcta agactcctaa
     651  acgagcaaaa gaagcacata tgcaaatgaa ggcggctgcg attagagggg
     701  caactaatcg cttgtttggc ctggatggta acgtaaacac aacggaagag
     751  gacacggaaa gacacacagc tgcgg