Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 564-OYDV5 polyprotein gene, partial cds.

ACC No: GQ475373

Dated: 2013-02-15 | Length: 771 | CRC: 1876230559

                
ID   GQ475373; SV 1; linear; genomic RNA; STD; VRL; 771 BP.
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AC   GQ475373;
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DT   13-SEP-2010 (Rel. 106, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
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DE   Onion yellow dwarf virus isolate 564-OYDV5 polyprotein gene, partial cds.
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KW   .
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OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-771
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
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RN   [2]
RP   1-771
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .771
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="564-OYDV5"
FT                   /mol_type="genomic RNA"
FT                   /country="Argentina"
FT                   /collection_date="2008"
FT                   /PCR_primers="fwd_seq: gcgggggaaggagaagatgcag, rev_seq:
FT                   aaccgtatcgttcgccacaactag"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>771
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E0X539"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E0X539"
FT                   /protein_id="ADM89567.1"
FT                   /translation="AGEGEDAAAQSSTAKQVTKQKDKDVDAGTTGKFSVPRIKALSDKM
FT                   RFPKVGKNVVLNAEHLLAYKPEQIELYNTRATLRQFENWYTAIKKEYDVNDEQMKIILD
FT                   GLMVWCIENGTSPNLTGNWTMMDGEEQVEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNLTELSLARYAFDFYEMTSKTPTRAKEAHMQMKAAAVRGATNR
FT                   LFGLDGNVSTIEEDTERHTAADVNKHQHTLLGIKM"
XX
SQ   Sequence 771 BP; 265 A; 154 C; 194 G; 158 T; 0 other;

gq475373 Length: 771  15-FEB-2013  Type: N  Check: 4464  ..

       1  gcgggggaag gagaagatgc agcagcgcaa tcaagcacag caaaacaagt
      51  caccaagcaa aaggacaagg atgttgatgc gggaacgact gggaagttct
     101  cagtgccacg gattaaagca ttatctgaca aaatgagatt ccctaaagtt
     151  gggaagaatg tcgtactaaa tgccgagcat ttattggcgt acaaaccaga
     201  gcagatagag ttatataaca cgagggcaac cctacgtcag ttcgaaaact
     251  ggtacacagc aattaagaaa gagtatgatg ttaacgatga acagatgaaa
     301  atcatactcg atgggctgat ggtgtggtgc attgaaaatg ggacatctcc
     351  gaatttaacg ggaaattgga caatgatgga tggagaagaa caagtcgagt
     401  acccgcttgc tccagtacta gacaatgcaa aacccacatt cagacaaatt
     451  atggcacatt tcagtgatgc agctgaagca tacattgaat atcgtaacgc
     501  aactgagaaa tacatgcccc ggtacggact tcagcgaaat ttaacagaat
     551  tgagcttggc acgttacgca ttcgactttt atgagatgac ctccaaaacc
     601  cctacaaggg ccaaagaggc acacatgcaa atgaaggcgg cggcggttag
     651  aggggcaact aatcgtctgt ttggcctgga tggtaacgtc agcactattg
     701  aagaggacac ggaaagacat acggctgctg atgtgaacaa gcatcaacac
     751  accttacttg gtatcaaaat g