Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 572-OYDV12 polyprotein gene, partial cds.

ACC No: GQ475383

Dated: 2013-02-15 | Length: 768 | CRC: -1668965448

                
ID   GQ475383; SV 1; linear; genomic RNA; STD; VRL; 768 BP.
XX
AC   GQ475383;
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DT   13-SEP-2010 (Rel. 106, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
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DE   Onion yellow dwarf virus isolate 572-OYDV12 polyprotein gene, partial cds.
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KW   .
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OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-768
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
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RN   [2]
RP   1-768
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .768
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Chenopodium quinoa"
FT                   /isolate="572-OYDV12"
FT                   /mol_type="genomic RNA"
FT                   /country="Argentina"
FT                   /collection_date="2008"
FT                   /PCR_primers="fwd_seq: gcgggggaaggagaagatgcag, rev_seq:
FT                   aaccgtatcgttcgccacaactag"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>768
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E0X548"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E0X548"
FT                   /protein_id="ADM89576.1"
FT                   /translation="AGEGEDAAQLSTSRQVTKQKDKDVDTGTTGKFTVPRIKALSDKMR
FT                   FPKVGKTVVLNAEHLLAYTPDQIELYNTRATRSQFENWYNAVKKEYDVDDEQMKILLNG
FT                   LMVWCIENGTSPNLSGNWTMMDGEEQVEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIEY
FT                   RNATEKYMPRYGLQRNITELSLARYAFDFYEMTSKTSKRAKEAHMQMKAAAIRGATNRL
FT                   FGLDGNVNTTEEDTERHTAADVNKNQHTLLGIRM"
XX
SQ   Sequence 768 BP; 271 A; 148 C; 184 G; 165 T; 0 other;

gq475383 Length: 768  15-FEB-2013  Type: N  Check: 9857  ..

       1  gcgggggaag gagaagatgc agcgcaatta agcacttcga ggcaagttac
      51  aaagcagaaa gacaaggacg ttgacactgg cacaaccggt aaatttacag
     101  tgcctagaat caaggctcta tccgacaaga tgaggtttcc aaaagttggc
     151  aaaactgtcg tactcaatgc agaacacttg ttagcttata caccagatca
     201  aattgaactg tacaacacaa gagcaacgag aagtcaattt gaaaactggt
     251  ataatgcagt aaagaaagag tacgacgtcg atgatgagca aatgaaaatt
     301  ttactaaatg gtttgatggt ttggtgcatt gagaatggaa catcacccaa
     351  tctatcagga aactggacca tgatggatgg cgaagagcag gttgagtatc
     401  cgctagcacc agttctcgat aacgcaaaac caaccttcag acaaataatg
     451  gcacatttca gtgatgcagc tgaagcatac attgaatata gaaacgccac
     501  agaaaaatac atgccccggt atggacttca gcgcaatata acagaactta
     551  gtttggcacg ttacgcattc gatttttacg agatgacttc taagacttct
     601  aaacgagcga aagaagcaca tatgcaaatg aaggcggctg cgattagagg
     651  ggcaactaat cgtttgtttg gcctggatgg taacgtaaac acaacggaag
     701  aggacacgga aagacacacg gctgcggatg ttaataagaa ccagcacaca
     751  ctgcttggta ttaggatg