Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 552-OYDV2 polyprotein-like gene, partial sequence.

ACC No: GQ475390

Dated: 2013-02-15 | Length: 772 | CRC: -1842011411

                
ID   GQ475390; SV 1; linear; genomic RNA; STD; VRL; 772 BP.
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AC   GQ475390;
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DT   13-SEP-2010 (Rel. 106, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
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DE   Onion yellow dwarf virus isolate 552-OYDV2 polyprotein-like gene, partial
DE   sequence.
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KW   .
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OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-772
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
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RN   [2]
RP   1-772
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .772
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="552-OYDV2"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /PCR_primers="fwd_seq: gcgggggaaggagaagatgcag, rev_seq:
FT                   aaccgtatcgttcgccacaactag"
FT                   /db_xref="taxon:43130"
FT   misc_feature    <1. .>772
FT                   /note="similar to polyprotein; contains coat protein"
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SQ   Sequence 772 BP; 276 A; 143 C; 189 G; 164 T; 0 other;

gq475390 Length: 772  15-FEB-2013  Type: N  Check: 9034  ..

       1  gcgggggaag gagaaagatg cagcagcgca atcaagtacg acgaaacaaa
      51  ttgtgaggca aaaggataaa gatgttgatg ctggaaccac tggtaagttt
     101  gcagtaccca ggattaaagt gctgtcagac aaaatgcgat ttccaaaggt
     151  tggcaagaaa gttgtactaa acgcagagca tttattagca tacaaacctg
     201  aacaaattga attgtacaac acgaggtcga cgcaacaaca gttcgagact
     251  tggtatatgg caatcaagaa agaatacgac gtggatgacg aacaaatgaa
     301  aatcatatta gatggtttaa tggtttggtg cattgagaat gggacttccc
     351  caaacctaac aggaaattgg actatgatgg atggtgatga gcaagtcgaa
     401  tatccattgg caccaatttt ggataatgcg aaaccgactt ttagacaaat
     451  aatggcgcat ttcagtgatg cagctgaagc atatattgaa tatcgaaacg
     501  ccacagaaaa atacatgccc cggtatggac ttcagcgaaa cctaacagaa
     551  ttcagtttag cacgttacgc attcgacttt tatgagatga cttcaaagac
     601  tcccaagcga gccaaggaag cacacatgca aatgaaggcg gcagcggtta
     651  gaggggcaac taaccgtttg tttggcctgg atggtaacgt aaacacaaca
     701  gaagaggaca cggaaaggca cactgcagca gacataaaca agaaccaaca
     751  cacgttgctt ggtattaaga tg