Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 538-OYDV2 polyprotein gene, partial cds.

ACC No: GQ475393

Dated: 2013-02-15 | Length: 771 | CRC: 1205871141

                
ID   GQ475393; SV 1; linear; genomic RNA; STD; VRL; 771 BP.
XX
AC   GQ475393;
XX
DT   13-SEP-2010 (Rel. 106, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
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DE   Onion yellow dwarf virus isolate 538-OYDV2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-771
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
XX
RN   [2]
RP   1-771
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .771
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="538-OYDV2"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /PCR_primers="fwd_seq: gcgggggaaggagaagatgcag, rev_seq:
FT                   aaccgtatcgttcgccacaactag"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>771
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E0X554"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E0X554"
FT                   /protein_id="ADM89582.1"
FT                   /translation="AGEGEDAAAQSNTPKQITKQKDKDVDTGTTGKFTIPRIKALSDKM
FT                   RFPKVGKIVVLNAEHLLEYKPDQIELYNTRSTKNQFENWYNAVKKEYDVNDEQMKILLN
FT                   GLMVWCIENGTSPNLSGNWTMMDDEEQVEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNITELSLARYAFDFYEMTSKTPKRAKEAHMQMKAAAIRGATNR
FT                   LFGLDGNVNTTEEDTEGHTAADVNKNQPTLLGIRM"
XX
SQ   Sequence 771 BP; 282 A; 135 C; 179 G; 175 T; 0 other;

gq475393 Length: 771  15-FEB-2013  Type: N  Check: 834  ..

       1  gctggagagg gggaagacgc agcagcacaa tcaaacacac caaagcaaat
      51  cacaaagcag aaagataaag atgttgacac tggtacaact ggtaagttca
     101  caattcctag aattaaagct ctatcagata aaatgaggtt tccaaaagtt
     151  ggcaaaatag ttgtacttaa tgcagagcac ttgttggaat acaagccaga
     201  ccaaatcgaa ctgtataata caagatcaac aaagaatcag tttgaaaatt
     251  ggtataatgc ggtgaagaaa gagtacgatg tcaatgatga gcaaatgaaa
     301  atattgctaa atggtttaat ggtttggtgt attgaaaatg gaacatctcc
     351  caatttatcg ggaaactgga ctatgatgga cgatgaagag caggttgaat
     401  atccattggc gccagttctg gataacgcaa aaccaacttt tagacaaata
     451  atggcacatt tcagtgatgc agctgaagca tacattgaat atagaaatgc
     501  cacagaaaaa tacatgcccc ggtatggact tcagcgcaat ataacagaac
     551  ttagtttggc acgttacgca ttcgattttt atgagatgac ttctaagact
     601  cctaaacgag cgaaagaagc acatatgcaa atgaaggcgg ctgcgattag
     651  aggggcaact aatcgcttgt ttggcctgga tggtaacgta aacacaacgg
     701  aagaggacac ggaaggacac acagctgcgg atgttaacaa gaaccagccc
     751  acgttgcttg gtataaggat g