Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 503-OYDV1 polyprotein gene, partial cds.

ACC No: GQ475398

Dated: 2013-02-15 | Length: 771 | CRC: -922308069

                
ID   GQ475398; SV 1; linear; genomic RNA; STD; VRL; 771 BP.
XX
AC   GQ475398;
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DT   13-SEP-2010 (Rel. 106, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
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DE   Onion yellow dwarf virus isolate 503-OYDV1 polyprotein gene, partial cds.
XX
KW   .
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OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-771
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
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RN   [2]
RP   1-771
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .771
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="503-OYDV1"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /PCR_primers="fwd_seq: gcgggggaaggagaagatgcag, rev_seq:
FT                   aaccgtatcgttcgccacaactag"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>771
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /db_xref="GOA:E0X559"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E0X559"
FT                   /protein_id="ADM89587.1"
FT                   /translation="AGEGEDAAAQSSTLKQIAKQKDKDVDTGTTGKFTIPRIKALSDKM
FT                   RFPKVGKTVVLNAEHLLEYKPDQIELYNTRSTKNQFENWYNAVKKEYDVNDEQMKILLN
FT                   GLMVWCIENGTSPNLSGNWTMMDDEEQVEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNLTELSLARYAFDFYEMTSKTPKRAKEAHMQMKAAAIRGATNR
FT                   LFGLDGNVNTTEEDTERHTAADVNKNQHTLLGIRM"
XX
SQ   Sequence 771 BP; 280 A; 134 C; 179 G; 178 T; 0 other;

gq475398 Length: 771  15-FEB-2013  Type: N  Check: 1546  ..

       1  gctggagagg gggaggatgc agcagcacaa tcaagcacac taaagcaaat
      51  tgcaaagcag aaagataaag atgttgacac tggtacaact ggtaagttca
     101  caatccctag aattaaagct ctatcagata aaatgaggtt tccaaaagtt
     151  ggcaaaactg ttgtacttaa tgcagagcac ttgttggaat acaagccaga
     201  tcaaatcgaa ctgtacaaca caagatcaac aaagaatcag tttgagaatt
     251  ggtataatgc ggttaagaaa gagtacgatg tcaatgatga gcaaatgaaa
     301  atattactaa atggtctaat ggtttggtgt attgaaaatg gaacatctcc
     351  taatttatcg ggaaactgga ctatgatgga tgatgaagag caggttgaat
     401  atccattggc gccagttctg gataacgcaa aaccaacctt tagacaaata
     451  atggcacatt tcagtgatgc agctgaagca tacattgaat atagaaatgc
     501  cacagaaaaa tacatgcccc ggtatggact tcagcgcaat ttaacagaac
     551  ttagtttggc acgttacgca ttcgattttt atgagatgac ttctaaaact
     601  cctaaacgag caaaagaagc acatatgcag atgaaggcgg ctgcgattag
     651  aggggcaact aatcgcttgt ttggcctgga tggtaacgta aacacaacgg
     701  aagaggacac ggaaagacac acagctgcgg atgttaacaa gaaccagcac
     751  acgttgcttg gtataaggat g