Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus isolate 491-LYSV1 coat protein gene, partial cds.

ACC No: GQ475417

Dated: 2013-02-15 | Length: 870 | CRC: 929734426

                
ID   GQ475417; SV 1; linear; genomic RNA; STD; VRL; 870 BP.
XX
AC   GQ475417;
XX
DT   18-AUG-2010 (Rel. 105, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
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DE   Leek yellow stripe virus isolate 491-LYSV1 coat protein gene, partial cds.
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KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-870
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
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RN   [2]
RP   1-870
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .870
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="491-LYSV1"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /PCR_primers="fwd_seq: ggcaaataatgaattagatgcaggca, rev_seq:
FT                   tcactgcatatgccgaccatcaag"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .870
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:E0X573"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:E0X573"
FT                   /protein_id="ADL59382.1"
FT                   /translation="ANNELDAGMQTSKKHKDGNDKSIEQRDPASPQISSLGKKDGEGGS
FT                   GMSRNKDRDVNVGTTGTFSVPRIKQIPQKGISIPMDGGKSILNLDHLLQYKPNQLNISN
FT                   TRATVAQFKTWMERVQEDYGVTQGEMGIILNGLMVWCIENGTSPNINGTWTMMDGDEQV
FT                   AYPLRPIVEHAKPTLRQIMAHFSALAEAYIEMRNSEQAYMPRYGLQRNLTDMGLARYAF
FT                   DFYEVTSRTPVRAREAHAQMKAAALRNSRSRLFGLDGNVTTTDEDTERHTAHDVNARMH
FT                   HLDGRHMQ"
XX
SQ   Sequence 870 BP; 304 A; 170 C; 213 G; 183 T; 0 other;

gq475417 Length: 870  15-FEB-2013  Type: N  Check: 9040  ..

       1  gcaaataatg aattagatgc aggcatgcaa acaagtaaga aacataagga
      51  tggtaatgat aaatccattg aacaacgcga tccagcatca ccacaaatta
     101  gttcactagg caagaaagat ggtgaaggcg gttcaggaat gagtagaaac
     151  aaagacaggg atgtgaacgt tggcacaaca gggactttta gtgttccacg
     201  aatcaaacag ataccacaga aaggtatttc gataccaatg gacggaggaa
     251  agtcaatact caacttagat cacttactac agtataaacc aaatcaattg
     301  aatatatcga acacaagagc cacagtggca caatttaaaa cctggatgga
     351  gagagtgcaa gaggattatg gtgtcactca aggtgaaatg ggcataattc
     401  taaatggttt gatggtgtgg tgcatcgaaa atggaacctc accaaatata
     451  aatgggactt ggactatgat ggatggcgat gagcaagtcg cgtacccttt
     501  acggccgatc gttgaacatg cgaaaccaac cttacggcaa ataatggcgc
     551  atttttcagc actcgcggag gcgtatattg aaatgagaaa ttcagagcag
     601  gcttatatgc caagatatgg actacaaaga aaccttacag acatgggcct
     651  cgcacggtat gcatttgatt tttatgaagt cacatcaaga acaccagtta
     701  gagcgcgcga ggctcacgca caaatgaaag cagcggccct acgtaattca
     751  aggtcaagac tgtttggact agacggtaac gtcacaacca cggatgagga
     801  cacggagagg cacacagcac atgacgtgaa tgcacggatg caccatcttg
     851  atggtcggca tatgcagtga