Sequence of DPV Garlic common latent virus

Garlic common latent virus isolate 195-GCLV3 coat protein (CP) gene, complete cds.

ACC No: GQ475419

Dated: 2013-02-15 | Length: 960 | CRC: 659853148

                
ID   GQ475419; SV 1; linear; genomic RNA; STD; VRL; 960 BP.
XX
AC   GQ475419;
XX
DT   18-AUG-2010 (Rel. 105, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 5)
XX
DE   Garlic common latent virus isolate 195-GCLV3 coat protein (CP) gene,
DE   complete cds.
XX
KW   .
XX
OS   Garlic common latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
XX
RN   [1]
RP   1-960
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
XX
RN   [2]
RP   1-960
RA   Afunian M.R., Parrano L., Pagliaccia D., Vidalakis G.;
RT   ;
RL   Submitted (13-AUG-2009) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, 900 University
RL   Ave, Riverside, CA 92521, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .960
FT                   /organism="Garlic common latent virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="195-GCLV3"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:47900"
FT   gene            1. .960
FT                   /gene="CP"
FT   CDS             1. .960
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0X575"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:E0X575"
FT                   /protein_id="ADL59384.1"
FT                   /translation="MSVSETEEQRSQRQFLERREAERRKNDAAVRARQDAAIDSEEPAD
FT                   VLETSVNDVDLRQMENRVQEAKRFLERFNKLKKFQADNMTAGEIKNGGFETGRPKLNIA
FT                   ANLRGDTANVFTRPSMDALIALDFKAESLAVATAEDLAAITAKFEQLGVPTERLAPLCW
FT                   SIARYCADTSSSYVADPKGTFEYPGGAITRDAVYAVIKEVTTLRAFCRAFAPVVWNEML
FT                   ITKRPPTGWQTKGYTASTKYAAFDTFDYVLNSACVQPLEGIIRVPTDEETIAHMTNKRI
FT                   TIDRNRRNGRFSSTNSLVTGGMFGKDIKTNFNGSNNAD"
XX
SQ   Sequence 960 BP; 276 A; 197 C; 251 G; 236 T; 0 other;

gq475419 Length: 960  15-FEB-2013  Type: N  Check: 4636  ..

       1  atgtcagtga gtgaaacaga ggagcagagg tcgcaacggc agtttttgga
      51  gagacgtgaa gctgagcgcc gcaaaaatga tgcagccgtt agagctagac
     101  aggatgctgc catcgattct gaagagcctg ctgatgtgct agaaacgagt
     151  gttaatgatg ttgacctgcg tcaaatggaa aacagggtcc aggaagctaa
     201  gcggtttctg gaacgcttca acaagctcaa gaagttccag gcagacaata
     251  tgactgcagg tgagatcaag aacggaggtt ttgagactgg gaggccaaaa
     301  ctgaacattg cggccaattt gcgtggcgat actgccaatg tattcactag
     351  acctagtatg gatgctttaa tagctttgga tttcaaggct gaatcattgg
     401  cagttgcaac cgctgaagat cttgctgcta tcactgcaaa attcgaacag
     451  cttggtgtgc ctacagagag attagctcct ctttgttggt cgattgcaag
     501  gtattgtgca gacactagct catcatatgt ggctgacccg aaaggaactt
     551  ttgaataccc cggaggcgca ataactaggg acgctgttta tgctgtcatc
     601  aaagaagtca cgaccctgag ggctttctgt cgagcctttg caccagtggt
     651  ttggaatgaa atgttgatca ctaagagacc acctactggt tggcaaacca
     701  aaggttacac tgctagcaca aagtatgctg ctttcgatac tttcgattat
     751  gtgctcaatt ctgcttgtgt gcagccactt gaggggatca tacgagtccc
     801  aaccgatgag gagaccatag ctcacatgac caacaagcgg atcactattg
     851  atagaaatag gcgcaatggc cggttttcaa gcacaaatag tttagttacg
     901  ggtggcatgt tcggtaagga tatcaaaaca aatttcaatg gatccaacaa
     951  tgcagactag