Sequence of DPV Pepper veinal mottle virus

Pepper veinal mottle virus isolate 2SPno2 polyprotein gene, partial cds.

ACC No: GQ918275

Dated: 2010-09-07 | Length: 1831 | CRC: 1429886947

                
ID   GQ918275; SV 1; linear; genomic RNA; STD; VRL; 1831 BP.
XX
AC   GQ918275;
XX
DT   26-OCT-2009 (Rel. 102, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 3)
XX
DE   Pepper veinal mottle virus isolate 2SPno2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Pepper veinal mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1831
RX   AGRICOLA; IND44341251.
RX   DOI; 10.1094/PDIS-94-3-0378B.
RA   Tsai W.S., Abdourhamane I.K., Kenyon L.;
RT   "First Report of Pepper veinal mottle virus Associated with Mosaic and
RT   Mottle Diseases of Tomato and Pepper in Mali";
RL   Plant Dis. 94(3):378-378(2010).
XX
RN   [2]
RP   1-1831
RA   Tsai W.S., Abdourhamane I.K., Kenyon L.;
RT   ;
RL   Submitted (16-SEP-2009) to the EMBL/GenBank/DDBJ databases.
RL   Virology Unit, AVRDC-The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74151, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1831
FT                   /organism="Pepper veinal mottle virus"
FT                   /host="sweet pepper"
FT                   /isolate="2SPno2"
FT                   /mol_type="genomic RNA"
FT                   /country="Mali:Baguineda"
FT                   /collection_date="Apr-2009"
FT                   /db_xref="taxon:255066"
FT   CDS             <1. .1455
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D0UVU8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D0UVU8"
FT                   /protein_id="ACX85251.1"
FT                   /translation="GNNSGQPSTVVDNTLMVLIAMRYSLRRLGMNYKDQIKRCVFFANG
FT                   DDLIVAVKHEDEWVLDSLQAPFQELGLSYNFDDRTTNRSELWFMSHQGKLIEDMYIPKL
FT                   EEERIVSILEWDRAEQPEHRLEAICAAMIEAWGHSELLHNIRLFYKWIIEQAPYSMLVA
FT                   NGKAPYISEVALRRLYTNGENDDDVSEYLKALSRNQKEIERLECDDFVLHQAGETVDAG
FT                   KSSGKEVTASKQPTTSQPIEAKTVLDRDVNAGTQGTFTIPRLKGMSSKLTLPKVSSQSV
FT                   VNLEHLLNYKPDQVHLSNTRALQSQFASWYNGVKNDYDVDDEQMKIILNGLMVWCIENG
FT                   TSPNINGMWVMVDGEEQIEYPIKPLIDHAKPSFRQIMAHFSNLAEAYIEKRNSEKSYMP
FT                   RYGLQRNLTDMSLARYAFDFYEMTSKTPVRAREAHIQMKAAALRNANNRMFGLDGKVGT
FT                   QEEDTERHTAEDVNRNMHNLLGVRGV"
FT   mat_peptide     643. .1452
FT                   /product="coat protein"
XX
SQ   Sequence 1831 BP; 564 A; 330 C; 425 G; 512 T; 0 other;

gq918275 Length: 1831  07-SEP-2010  Type: N  Check: 5931  ..

       1  gggaataata gtggtcagcc atcaaccgtt gttgataaca ctctcatggt
      51  tttaattgcc atgagatact cattaaggcg gcttggtatg aattataaag
     101  atcagatcaa aagatgtgtt ttctttgcaa atggagatga tctcatcgtg
     151  gctgtgaaac atgaggatga atgggtgctc gactcgctac aagcaccctt
     201  tcaagagctt ggtttatcat acaattttga tgatagaacc acaaatagat
     251  cagagctttg gttcatgtca caccagggca aactgataga agatatgtac
     301  atcccaaaac ttgaggagga acgtattgtt tcaattttag agtgggatcg
     351  agctgagcag ccagaacaca ggttagaggc aatttgtgct gcgatgattg
     401  aagcatgggg tcatagcgaa ttacttcata acattcgttt gttttacaaa
     451  tggataatcg aacaagcgcc ctattcaatg ctcgtggcaa atggaaaagc
     501  tccatacata tcagaagtgg cattaagaag gctgtacaca aatggagaga
     551  atgatgatga tgtcagtgaa tacttgaaag ctctctccag gaatcagaaa
     601  gagatcgaga ggcttgaatg tgatgacttt gttctacacc aagccggtga
     651  gactgtcgat gcaggaaaga gctcaggcaa agaagtgaca gcatcaaaac
     701  aaccaaccac cagccagcca atagaggcaa agactgtttt agatcgagat
     751  gtcaatgcag gaacacaggg gactttcaca ataccaaggc tcaaaggaat
     801  gtcttcgaaa ctgactctac ccaaagtcag ttctcaaagt gttgtgaatc
     851  tagaacatct attaaattat aagccggacc aagttcatct aagtaataca
     901  cgagcattgc agtcacagtt cgcttcctgg tataacgggg taaagaacga
     951  ctatgatgtt gatgatgaac agatgaaaat tatcttgaat ggcttaatgg
    1001  tttggtgtat agaaaatgga acatcgccca acatcaacgg gatgtgggtg
    1051  atggttgatg gtgaagagca gattgaatat ccaattaaac cattgattga
    1101  tcatgccaaa ccttcattta gacaaatcat ggcgcatttc agtaacctgg
    1151  ctgaggcgta cattgagaag cgcaattcgg agaagtctta tatgccaaga
    1201  tacggacttc aaagaaatct taccgatatg tcattagcgc gatatgcttt
    1251  tgatttctat gaaatgacat caaaaactcc cgttcgagca cgtgaagctc
    1301  atattcaaat gaaggctgca gctttgcgca atgccaacaa tcgaatgttc
    1351  ggactggacg gtaaggtagg cacacaggag gaggataccg aaaggcacac
    1401  cgctgaagat gtaaacagga atatgcacaa tcttcttggt gttcgaggag
    1451  tatgagtact tacttttata taatagtaaa caatgcatat atagtatata
    1501  atagcttggt ctatgtttct aggttcgtgt attcctcagc gtggtttcca
    1551  ccataggtta ctcgagacta gtttcctact atatatttag ccagtgttgg
    1601  tttcattttg tcttgctaaa gtgtgaattt tcacggtggt ggcttgacat
    1651  cttgttgcta tgctagctta ataaagtgtt ttgtttagta ttttataact
    1701  aagtaactgt gtaatcctgc cggctttagc gtggttatac cacctgatag
    1751  agtctggcgg caaaaattat gtttatggct tgcagtgagt gaggttgcac
    1801  ctcgtctaca agcggtttca taattggcgc t