Sequence of DPV Bhendi yellow vein mosaic virus
Bhendi yellow vein India virus [India:Aurangabad:OY164B:2006] segment DNA-A, complete sequence.
ACC No: GU112030
Dated: 2012-05-20 | Length: 2744 | CRC: -92920843
ID GU112030; SV 1; circular; genomic DNA; STD; VRL; 2744 BP.
XX
AC GU112030;
XX
DT 02-JAN-2011 (Rel. 107, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Bhendi yellow vein India virus [India:Aurangabad:OY164B:2006] segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS Bhendi yellow vein India virus [India:Aurangabad:OY164B:2006]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2744
RX PUBMED; 22447131.
RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA Krishna Reddy M.;
RT "Molecular characterization of distinct bipartite begomovirus infecting
RT bhendi (Abelmoschus esculentus L.) in India";
RL Virus Genes 44(3):522-535(2012).
XX
RN [2]
RP 1-2744
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT "Molecular genetic diversity of begomoviruses infecting okra in India";
RL Unpublished.
XX
RN [3]
RP 1-2744
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT ;
RL Submitted (29-SEP-2009) to the INSDC.
RL Division of Plant Pathology, Indian Institute of Horticultural Research,
RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2744
FT /organism="Bhendi yellow vein India virus
FT [India:Aurangabad:OY164B:2006]"
FT /segment="DNA-A"
FT /host="Abelmoschus esculentus (okra)"
FT /isolate="OY164B"
FT /mol_type="genomic DNA"
FT /country="India:Aurangabad, Maharashtra"
FT /isolation_source="leaf"
FT /collected_by="M.Krishnareddy"
FT /collection_date="2006"
FT /db_xref="taxon:908024"
FT gene 121. .486
FT /gene="AV2"
FT CDS 121. .486
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:E7BP16"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:E7BP16"
FT /protein_id="ADO40690.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQEYSPDTLGYDLIRDL
FT ICIVRSRNYVEASCRYRHFYARVESTPASELRQPLHQPCCCPHCPRHKTTGMDKQAYEQ
FT ETQNVPDVQKSGCSKGM"
FT gene 281. .1051
FT /gene="AV1"
FT CDS 281. .1051
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:E7BP17"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E7BP17"
FT /protein_id="ADO40691.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHMGKLMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLSKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(629. .985)
FT /gene="AC5"
FT CDS complement(629. .985)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:E7BP18"
FT /protein_id="ADO40692.1"
FT /translation="MGTSHIKHQCILRVILVFSCLLLVVNNIIVNPDKFLNQRLFLTRI
FT LSTSNGCMPFTQHLVPIPMHVLNGGRTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR
FT MVLGLDVLVHPYLT"
FT gene complement(1054. .1458)
FT /gene="AC3"
FT CDS complement(1054. .1458)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:E7BP19"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E7BP19"
FT /protein_id="ADO40693.1"
FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI
FT ITMRIQFNYNLRKALGIHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNL
FT VIKAVEHVLYNVINQTMYVDQYSDIKFKLY"
FT gene complement(1151. .1603)
FT /gene="AC2"
FT CDS complement(1151. .1603)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /db_xref="GOA:E7BP20"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E7BP20"
FT /protein_id="ADO40694.1"
FT /translation="MQHSSFSPNRSTPVPIKVQHREAKRRIRRKRVDLECGCTYYLTIN
FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP
FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLT"
FT gene complement(1500. .2591)
FT /gene="AC1"
FT CDS complement(1500. .2591)
FT /codon_start=1
FT /gene="AC1"
FT /product="replicase"
FT /db_xref="GOA:E7BP21"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E7BP21"
FT /protein_id="ADO40695.1"
FT /translation="MAAPNRFRINAKNYFLTYHKCSLTKEEALSQFLNLQTPVNKKFIR
FT ICRELHEDGNPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDILDHGVFQVDGRSARGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH
FT NLNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEED
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKAWALKNATFVFLTQPL
FT YSGTNQSSTQGSEETHQEEKSGP"
FT gene complement(2141. .2434)
FT /gene="AC4"
FT CDS complement(2141. .2434)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E7BP22"
FT /protein_id="ADO40696.1"
FT /translation="MGILTCMFSSSSKESSSAGTIDSSTSPPQLGQHISIRTFRELKAQ
FT AMSKPTWRKTETSLIMEFSKSMEDQLEEVAKLPTTHMPRQSTQGPKLRPSIY"
XX
SQ Sequence 2744 BP; 723 A; 528 C; 658 G; 835 T; 0 other;
gu112030 Length: 2744 20-MAY-2012 Type: N Check: 1809 ..
1 accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg
51 atgcagactc aaagcttaga taacgctctt tcgactataa gtacgtgcgc
101 actaagtttc aattcaaaaa atgtgggatc cactattaaa cgagttcccg
151 gatacggttc acggttttcg ttgtatgctt tctgtgaaat atttgcaact
201 tttgtcgcag gagtattcac cagatacgct tggttacgat ttaatacggg
251 atttaatttg tattgtccgt tctcgtaatt atgtcgaagc gagctgcaga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
351 gcagccctta caccagccgt gctgctgccc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
451 gatgtacaga agtccggatg ttccaagggg atgtgagggt ccctgtaagg
501 tacagtcgtt tgaatctcga cacgatgttg tccatatggg taagttaatg
551 tgtatttcgg atgttacgcg gggagtcggt ttgacccatc gtataggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
701 cgtgatcgac gaccgacaga taaaccacaa gattttggtg aagtatttaa
751 tatgtttgat aacgagccca gtacggccac cgttaagaac atgcataggg
801 atcggtacca ggtgttgagt aaatggcatg caaccgttac tggtggacaa
851 tatgcgagta aggaacaggc gttggttaag aaatttgtca gggttaacaa
901 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacacgg
951 agaatgcatt gatgctttat atggcttgta cccatgctag caacccagtt
1001 tatgctacgc ttaagattcg gatatatttt tatgactctg taacgaattg
1051 aaattaataa agtttgaatt ttatatctga atattggtct acatacattg
1101 tttgattaat tacattgtac aatacatgtt cgacggcttt aataactaaa
1151 ttaagtgaga ttacacctag attgttgaga tatttgagga cttgggtttt
1201 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgtattccca gagctttccg taggttgtag
1301 ttgaattgga tcctcattgt tatgatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ctgaggattt tgaaataaag gggatttgga acctcccaga
1401 taaagacgcc attcgttgaa tgagctgcag tgatgcgttc ccctgtgcga
1451 gaatccatgg ttgtggcagt tgatagttag gtaataggtg catccacact
1501 caaggtccac tcttttcctc ctgatgcgtc tcttcgcttc cctgtgttga
1551 actttgattg gtaccggagt agagcggttg ggtgagaaag acgaatgttg
1601 cattctttaa agcccaggct ttcaaagctg agttcttatc ctcgtctaag
1651 aactctttat agcttgcatt gggccctgga ttgcagagga agattgttgg
1701 tatgccgcct ttaatttgaa ctggcttccc gtactttgtg tttgattgcc
1751 agtccctttg ggcccccatg aattctttaa agtgttttag gaagtgtgga
1801 tcgacgtcat caatgacgtt ataccaagcg tcgttactgt acacctttgg
1851 gctaaggtcc agatgcccgc ataaatagtt atgtgggcct aaagacctag
1901 cccacattgt ttttccagta cgactatctt cctcaatcac tatactttga
1951 ggtctcaggg gccgcgcagc ggcatcgaca acgttctcgc acgcccactc
2001 ttcaagttct tctggaactt gatcaaatga agaagaagaa aaaggagaaa
2051 cataaggagc tggaggctcc tgaaaatatc tatctaaatt agaatttaaa
2101 ttatgaaatt gaagtagaaa gtctcttggg gctttctcct tcagtatatt
2151 gagggcctga gctttggacc ctgcgttgat tgcctcggca tatgcgtcgt
2201 tggcagtttg gcaacctcct ctagctgatc ttccatcgac ttggaaaact
2251 ccatgatcaa ggatgtctcc gtctttctcc atgtaggttt tgacatcgct
2301 tgagctttta gctccctgaa tgttcggatg gaaatgtgct gacctagttg
2351 gggaggtgag gtcgaagaat ctattgttcc tgcactggaa ctttccttcg
2401 aactggatga gaacatgcaa gtgaggattc ccatcttcat gaagttctct
2451 gcagattcta atgaattttt tgtttactgg ggtttggaga tttaagaatt
2501 gggaaagtgc ttcttcttta gtcagagagc acttgtgata agtgaggaaa
2551 taatttttgg catttattct aaaccgattg ggtgctgcca tgttgactta
2601 gtcaatcggt gtctctcaac tctctctatg tatcggtgta ttggagtcct
2651 atatatatgg agactctaat ggcataaatg taaataaaag aactttaatt
2701 tgaaattcaa aggaaaaggc taaagcggcc atccgtctaa tatt