Sequence of DPV Shallot latent virus

Shallot latent virus isolate Piraquara/PR coat protein gene, complete cds.

ACC No: GU120175

Dated: 2011-02-03 | Length: 894 | CRC: 1887911631

                
ID   GU120175; SV 1; linear; genomic RNA; STD; VRL; 894 BP.
XX
AC   GU120175;
XX
DT   31-JAN-2011 (Rel. 107, Created)
DT   03-FEB-2011 (Rel. 107, Last updated, Version 2)
XX
DE   Shallot latent virus isolate Piraquara/PR coat protein gene, complete cds.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
XX
RN   [1]
RP   1-894
RA   Mituti T., Marubayashi J.M., Moura M.F., Krause-Sakate R., Pavan M.A.;
RT   "First Report of Shallot latent virus in Garlic in Brazil";
RL   Plant Dis. 95(2):227-227(2011).
XX
RN   [2]
RP   1-894
RA   Mituti T., Marubayashi J.M., Moura M.F., Krause-Sakate R., Pavan M.A.;
RT   ;
RL   Submitted (16-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Protection, UNESP/FCA, Rua Jose Barbosa de Barros, 1780, Botucatu, SP
RL   18610307, Brazil
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .894
FT                   /organism="Shallot latent virus"
FT                   /host="garlic"
FT                   /isolate="Piraquara/PR"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="10-Oct-2008"
FT                   /db_xref="taxon:12172"
FT   CDS             1. .894
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP; capsid protein"
FT                   /protein_id="ADB22529.1"
FT                   /translation="MTNEEEELNRVKNLPMRDPGTLPDGERSKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMADLSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRESRC"
XX
SQ   Sequence 894 BP; 246 A; 205 C; 235 G; 208 T; 0 other;

gu120175 Length: 894  03-FEB-2011  Type: N  Check: 3096  ..

       1  atgacaaacg aagaagaaga actcaacaga gttaagaatt tgcccatgcg
      51  cgacccgggg acactacccg atggggaacg cagtaaggcc gtcaatgatg
     101  ttggtgttat ggaacgtgaa ggcttcgaag ccgtccttcg tagaagtgaa
     151  agtagattca acaaacttaa agagaagtgc atggctgatt tatctagcat
     201  taatgtgacg aattgtggat gggaatccgg acgcccgaaa gctcagctcg
     251  cagatagtct taaaggggat gcttcaaata ttttcacccg tccctccatg
     301  gatgcgcttt tggtacggaa ctacgcacct gagagtaata atctggcgac
     351  cgccgaggaa ttggcgaaaa tatccgctaa agtgcaggct ctaggcgcac
     401  cggaagagtg ccttgctgaa gtgttctggg acatttgcat gtattgcacc
     451  acagccggga gttcgcccaa tgtgaaccct aaagggacca tctctgtcgg
     501  tggtaaggtt gtaactaggg acatggtggt cgccgtcatt aaggaatact
     551  caacgctacg acaggtttgc cgttgttacg cgcccgttgt ttggaattac
     601  atgttattga atgagcaacc gcccgctaat tgggacgcga aggggttcac
     651  tgagaacact aaatatgccg cttttgatac cttcgatgcg gttactaaca
     701  aagctgcaat ccaaccgctg gaaggcctga taagggcccc gactgacgct
     751  gaacgcatcg ctttcgcgac tcacaagaag ttggcccttg cgaagaattc
     801  acaaaattcc cgatacgcca acacctctgc tgaggtcact ggaggattct
     851  tcggatgctt tcctaaaaac aactttagag aaagtcgatg ttga