Sequence of DPV Potato virus A

Potato virus A isolate Sam-22-PVA polyprotein gene, partial cds.

ACC No: GU144314

Dated: 2010-09-07 | Length: 1005 | CRC: 722260841

                
ID   GU144314; SV 1; linear; genomic RNA; STD; VRL; 1005 BP.
XX
AC   GU144314;
XX
DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE   Potato virus A isolate Sam-22-PVA polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus A
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1005
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
XX
RN   [2]
RP   1-1005
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1005
FT                   /organism="Potato virus A"
FT                   /host="potato, Kennebec cultivar"
FT                   /isolate="Sam-22-PVA"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Scotland"
FT                   /db_xref="taxon:12215"
FT   CDS             <1. .832
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYL4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYL4"
FT                   /protein_id="ADA57714.1"
FT                   /translation="YDMVYFQAGTLDAGETPAQKTEGRKREGEGNSGTAVAVKDKDVDL
FT                   GTAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYD
FT                   GVMASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQISYPLKPMLDHAKP
FT                   SLRQVMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRA
FT                   KEAHLQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVKGV"
FT   mat_peptide     <1. .22
FT                   /product="NIb replicase"
FT   mat_peptide     23. .829
FT                   /product="coat protein"
XX
SQ   Sequence 1005 BP; 315 A; 199 C; 236 G; 255 T; 0 other;

gu144314 Length: 1005  07-SEP-2010  Type: N  Check: 9633  ..

       1  ttatgacatg gtgtatttcc aagccggaac tcttgatgca ggcgaaacac
      51  cagcgcagaa aactgaaggt aggaagagag aaggagaagg caacagtggt
     101  acagctgttg ccgtgaagga caaagatgtc gatttaggta ctgctgggac
     151  tcattcagta ccacgcttaa aatcaatgac atcaaaactg acactaccaa
     201  tgctcaaagg taagagtgtc gttaacctag atcacttgct atcttacaaa
     251  ccaaagcaag tagacttgtc aaatgctaga gccacccacg aacaattcca
     301  aaactggtat gatggcgtta tggcaagtta tgagttagag gaatcaagca
     351  tggagatcat tctaaatggt ttcatggtat ggtgcattga gaatggaact
     401  tctccagaca tcaatggagt ttggactatg atggatggcg aagagcaaat
     451  atcataccca ctcaaaccca tgcttgatca tgcaaagcct tctttaaggc
     501  aagttatgag gcatttcagt gcgctcgcag aggcgtatat tgaaatgaga
     551  agtcgtgaga aaccatacat gcccaggtat ggtcttcaac gcaatctgag
     601  agaccaaagt ttggcaaggt acgcttttga tttctatgag atcactgcta
     651  ccactccggt cagagccaaa gaggcgcatc tgcaaatgaa agctgcagcg
     701  ctgaagaatt cgaacactaa catgtttgga ctggacggaa atgtcacaac
     751  ttcggaagag gacacagaaa ggcacacagc aacggatgtt aatcgtaaca
     801  tgcatcacct tctgggcgtg aagggggtgt aaccgaagtg ccgtactatt
     851  attatatata agagttcctg ttagtatcct tgtcctatta ttagaatatg
     901  tttgtctttc aacatgtacg atgttcgtgc tctcatctcg caacagtgag
     951  tttgagtggg aaataagtac taatattcta tggccttact tgttatatag
    1001  accca