Sequence of DPV Potato virus A

Potato virus A isolate 136-PVA polyprotein gene, partial cds.

ACC No: GU144315

Dated: 2010-09-07 | Length: 977 | CRC: -84153413

                
ID   GU144315; SV 1; linear; genomic RNA; STD; VRL; 977 BP.
XX
AC   GU144315;
XX
DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Potato virus A isolate 136-PVA polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus A
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-977
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
XX
RN   [2]
RP   1-977
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .977
FT                   /organism="Potato virus A"
FT                   /host="potato, Orkney Black cultivar"
FT                   /isolate="136-PVA"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Shetland"
FT                   /collection_date="May-2008"
FT                   /db_xref="taxon:12215"
FT   CDS             <1. .818
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYL5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYL5"
FT                   /protein_id="ADA57715.1"
FT                   /translation="FQAGTLDAGETTAQKTEGRKREGEGNSGKAVAVKDKDVDLGTAGT
FT                   HSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGVMAS
FT                   YELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQISYPLKPMLDHAKPSLRQV
FT                   MRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKEAHL
FT                   QMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVKGV"
FT   mat_peptide     <1. .8
FT                   /product="NIb replicase"
FT   mat_peptide     9. .815
FT                   /product="coat protein"
XX
SQ   Sequence 977 BP; 313 A; 192 C; 227 G; 245 T; 0 other;

gu144315 Length: 977  07-SEP-2010  Type: N  Check: 1253  ..

       1  atttccaagc cggaactctt gatgcaggcg aaacaacagc gcagaaaact
      51  gaaggtagga agagagaagg agaaggcaac agtggcaaag ctgttgccgt
     101  gaaggacaaa gatgtcgatt taggtactgc tgggactcat tcagtaccac
     151  gcttaaaatc aatgacatca aaactgacac taccaatgct caaaggtaag
     201  agtgtcgtta acctagatca cttgctatct tacaaaccaa agcaagtaga
     251  cttgtcaaat gctagagcca cccacgaaca attccaaaac tggtatgatg
     301  gcgttatggc aagttatgag ttagaggaat caagcatgga gatcattcta
     351  aatggtttca tggtatggtg cattgagaat ggaacttctc cagacattaa
     401  tggagtttgg actatgatgg atggtgaaga gcaaatatca tacccactca
     451  aacccatgct tgatcatgca aagccttctt taaggcaagt tatgaggcat
     501  ttcagtgcgc tcgcagaggc gtatattgaa atgagaagtc gtgagaaacc
     551  atacatgccc aggtatggtc ttcaacgcaa tctgagagac caaagtttag
     601  caaggtacgc ttttgatttc tatgagatca ctgctaccac tccggtcaga
     651  gccaaagaag cgcatctgca aatgaaagct gcagcgctga agaattcgaa
     701  cactaacatg tttggactgg acggaaatgt cacaacttcg gaagaggaca
     751  cagaaaggca cacagcaacg gatgttaatc gtaacatgca tcaccttctg
     801  ggcgtgaagg gggtgtaacc gaagtgccgt actattatta tatataagag
     851  ttcctgttag tatccttgtc ctattattag aatatgtttg tctttcaaca
     901  agtacaatgt tcgtgctctc atctcgcaac agtgagtttg agtgggaaat
     951  aagtactaat attctatggc cttactt