Sequence of DPV Potato virus A

Potato virus A isolate 137-PVA polyprotein gene, partial cds.

ACC No: GU144316

Dated: 2010-09-07 | Length: 996 | CRC: -527135113

                
ID   GU144316; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
XX
AC   GU144316;
XX
DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Potato virus A isolate 137-PVA polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus A
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-996
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
XX
RN   [2]
RP   1-996
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .996
FT                   /organism="Potato virus A"
FT                   /host="potato, Red Foula cultivar"
FT                   /isolate="137-PVA"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Shetland"
FT                   /collection_date="May-2008"
FT                   /db_xref="taxon:12215"
FT   CDS             <1. .829
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYL6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYL6"
FT                   /protein_id="ADA57716.1"
FT                   /translation="DMVYFQAGTPDAGETAAQKSEGRRKEGEGNSGKAVAVKDKDVDLG
FT                   TAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDG
FT                   VMASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDDEEQVSYPLKPMLDHAKPS
FT                   LRQIMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAK
FT                   EAHLQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVKGV"
FT   mat_peptide     <1. .19
FT                   /product="NIb replicase"
FT   mat_peptide     20. .826
FT                   /product="coat protein"
XX
SQ   Sequence 996 BP; 316 A; 190 C; 236 G; 254 T; 0 other;

gu144316 Length: 996  07-SEP-2010  Type: N  Check: 279  ..

       1  tgacatggtg tatttccaag ccggaactcc tgatgcaggc gaaacagcag
      51  cgcagaaatc tgaaggtagg aggaaagaag gagaaggcaa cagtggcaaa
     101  gctgttgccg tgaaggacaa agatgtcgat ttaggtactg ctgggactca
     151  ttcagtacca cgcttaaaat caatgacatc aaaactgaca ctaccaatgc
     201  tcaaaggtaa gagtgtcgtt aacctagatc acttgctatc ttacaaacca
     251  aagcaagtag acttgtcaaa tgctagagcc actcacgaac aattccaaaa
     301  ctggtatgat ggcgttatgg caagttatga gttagaggaa tcaagcatgg
     351  agatcattct aaatggtttc atggtatggt gtattgagaa tggaacttct
     401  ccagacatta atggagtttg gaccatgatg gatgatgagg aacaagtgtc
     451  atatccatta aaacccatgc ttgaccatgc aaagccttct ttaaggcaaa
     501  ttatgagaca tttcagcgca ctcgcagagg cgtacattga gatgagaagt
     551  cgtgagaaac catacatgcc caggtatggt cttcagcgca acttgagaga
     601  tcaaagtttg gcaaggtatg catttgattt ctatgagatc actgcaacca
     651  ctccggtcag agccaaggag gcgcatttgc aaatgaaagc agctgcgctg
     701  aagaattcga acactaacat gtttggactg gacggaaatg tcacaacttc
     751  ggaagaggac acagaaaggc acacagcaac ggatgttaat cgcaacatgc
     801  atcaccttct gggcgtgaag ggggtgtaac cgaagtgccg tactattatt
     851  atatataaga gttcctgtta gtatccttgt cctattatta gaatacgttt
     901  atctttcaac aagtatgata ttcgtgctct catctcgcaa tagtgagttt
     951  gagtgggaaa taagtactag tattctatgg ccttacttgt tatata