Sequence of DPV Potato virus A

Potato virus A isolate 140-PVA polyprotein gene, partial cds.

ACC No: GU144318

Dated: 2010-09-07 | Length: 990 | CRC: -1252645965

                
ID   GU144318; SV 1; linear; genomic RNA; STD; VRL; 990 BP.
XX
AC   GU144318;
XX
DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE   Potato virus A isolate 140-PVA polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus A
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-990
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
XX
RN   [2]
RP   1-990
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .990
FT                   /organism="Potato virus A"
FT                   /host="potato, Shetland Black cultivar"
FT                   /isolate="140-PVA"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Shetland"
FT                   /collection_date="May-2008"
FT                   /db_xref="taxon:12215"
FT   CDS             <1. .827
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYL8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYL8"
FT                   /protein_id="ADA57718.1"
FT                   /translation="MVYFQAGTLDAGETPAQKTEGRKREGEGNSGKAVAVKDKDVDLGT
FT                   AGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDGV
FT                   MASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQISYPLKPMLDHAKPSL
FT                   RQVMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAKE
FT                   AHLQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVKGV"
FT   mat_peptide     <1. .17
FT                   /product="NIb replicase"
FT   mat_peptide     18. .824
FT                   /product="coat protein"
XX
SQ   Sequence 990 BP; 311 A; 194 C; 235 G; 250 T; 0 other;

gu144318 Length: 990  07-SEP-2010  Type: N  Check: 7120  ..

       1  acatggtgta tttccaagcc ggaactcttg atgcaggcga aacaccagcg
      51  cagaaaactg aaggtaggaa gagagaagga gaaggcaaca gtggcaaagc
     101  tgttgccgtg aaggacaaag atgtcgattt aggtactgct gggactcatt
     151  cagtaccacg cttaaaatca atgacatcaa aactgacact accaatgctc
     201  aaaggtaaga gtgttgttaa cctagatcac ttgctatctt acaaaccaaa
     251  gcaagtagac ttgtcaaatg ctagagccac ccacgaacaa ttccaaaact
     301  ggtatgatgg cgttatggca agttatgagt tagaggaatc aagcatggag
     351  atcattctaa atggtttcat ggtatggtgc attgagaatg gaacttctcc
     401  agacattaat ggagtttgga ctatgatgga tggcgaagag cagatatcat
     451  acccactcaa acccatgctt gatcatgcaa agccttcttt aaggcaagtt
     501  atgaggcatt tcagtgcgct cgcagaggcg tatattgaaa tgagaagtcg
     551  tgagaaacca tacatgccca ggtatggtct tcaacgcaat ctgagagacc
     601  aaagtttggc aaggtacgct tttgatttct atgagatcac tgctaccact
     651  ccggtcagag ccaaagaggc gcatctgcaa atgaaagctg cagcgctgaa
     701  gaattcgaac accaacatgt ttggactgga cggaaatgtc acaacttcgg
     751  aagaggacac agaaaggcac acagcaacgg atgttaatcg taacatgcat
     801  caccttctgg gcgtgaaggg ggtgtaaccg aagtgccgta ctattattat
     851  atataagagt tcctgttagt atccttgtcc tattattaga atatgtttgt
     901  ctttcaacaa gtacgatgtt cgtgctctca tctcgcaaca gtgagtttga
     951  gtgggaaata agtattaata ttctatggcc ttacttgtta