Sequence of DPV Potato virus V

Potato virus V isolate 138-PVV polyprotein gene, partial cds.

ACC No: GU144335

Dated: 2010-09-07 | Length: 913 | CRC: 375778072

                
ID   GU144335; SV 1; linear; genomic RNA; STD; VRL; 913 BP.
XX
AC   GU144335;
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DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Potato virus V isolate 138-PVV polyprotein gene, partial cds.
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KW   .
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OS   Potato virus V
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-913
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
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RN   [2]
RP   1-913
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .913
FT                   /organism="Potato virus V"
FT                   /host="potato"
FT                   /isolate="138-PVV"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Shetland"
FT                   /collection_date="May-2008"
FT                   /db_xref="taxon:40640"
FT   CDS             <1. .839
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYN5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYN5"
FT                   /protein_id="ADA57735.1"
FT                   /translation="YEVRHQAKEEASSLDAGKDPAKEKSAKLPAAAGEQSSKSLEERDV
FT                   NAGTTGTFTIPRIKAISEKMRQPKVNGVSALNFEHLLVYKPSQIDISNARATQSQFNNW
FT                   FSEVQKAYDVEAGDMGTILNGLMVWCIENGTSPNVNGVWTMMDGEEQVEFPLKPVIENA
FT                   KPTFRQIMAHFSDVAEAYIEMRNKSEPYMPRYGLVRNLRDMSLARYAFDFYEITSRTSV
FT                   RAREAHIQMKAAALKTAQTRLFGLDGGISTQEENTERHTTEDVAPNLHTMLGVRNM"
FT   mat_peptide     <1. .20
FT                   /product="NIb replicase"
FT   mat_peptide     21. .836
FT                   /product="coat protein"
XX
SQ   Sequence 913 BP; 289 A; 171 C; 232 G; 221 T; 0 other;

gu144335 Length: 913  07-SEP-2010  Type: N  Check: 2751  ..

       1  cgtatgaagt cagacatcaa gcaaaagaag aagccagttc gcttgatgct
      51  ggaaaagacc cagcaaagga aaaatctgcg aagttacctg ccgcagctgg
     101  tgagcaatca agtaagagtc tcgaagaacg ggatgtaaat gcaggaacaa
     151  ctggcacgtt cacaatcccg cgcatcaagg cgatctctga gaaaatgcgc
     201  caaccaaagg ttaatggggt gagtgcactg aattttgagc atctgttggt
     251  ctacaaacca agccaaattg atatctctaa cgcaagggca actcagagtc
     301  aatttaataa ctggttctct gaagttcaaa aagcatacga tgttgaagct
     351  ggcgatatgg gaactatctt aaatggtttg atggtttggt gcattgagaa
     401  tggaacatca ccgaatgtga atggagtttg gacaatgatg gatggtgagg
     451  aacaagtgga gtttccccta aaaccagtga tcgaaaatgc gaagcctact
     501  tttaggcaga taatggcaca tttttctgat gtggctgagg cgtatataga
     551  gatgcgtaac aagagtgaac catacatgcc acggtatggt ttggtgagaa
     601  atttgcgaga tatgagttta gctcgatatg catttgattt ctatgagatc
     651  acatctcgca catccgtccg agcacgagag gctcacatcc agatgaaggc
     701  agcagcactg aaaactgcgc aaactcgctt gtttggattg gatggtggca
     751  taagtacaca ggaagaaaac acagaaagac acaccacaga ggatgtggcc
     801  cccaacctgc atactatgct tggggtcagg aacatgtagc tgagtgtttt
     851  aactgggatg aaatatagct ataaatatgc agaatatagt ttggcttttc
     901  ttcgtactag ctt