Sequence of DPV Potato virus V

Potato virus V isolate Sam-06-PVV polyprotein gene, partial cds.

ACC No: GU144343

Dated: 2010-09-07 | Length: 926 | CRC: -605221095

                
ID   GU144343; SV 1; linear; genomic RNA; STD; VRL; 926 BP.
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AC   GU144343;
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DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Potato virus V isolate Sam-06-PVV polyprotein gene, partial cds.
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KW   .
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OS   Potato virus V
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-926
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
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RN   [2]
RP   1-926
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .926
FT                   /organism="Potato virus V"
FT                   /host="potato, Estima cultivar"
FT                   /isolate="Sam-06-PVV"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Scotland"
FT                   /db_xref="taxon:40640"
FT   CDS             <1. .843
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYP3"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYP3"
FT                   /protein_id="ADA57743.1"
FT                   /translation="VSYECRHQAKEEASSLDAGKDPAKEKSAKLPAAAGEQSSKGLEER
FT                   DVNAGTTGTFTIPRIKAISEKMRQPKVNGVSALNFEHLLVYKPSQIDISNARATQSQFN
FT                   NWFSEVQKAYDVEAGDMGTILNGLMVWCIENGTSPNVNGVWTMMDGEEQVEFPLKPVIE
FT                   NAKPTFRQIMAHFSDVAEAYIEMRNKSEPYMPRYGLVRNLRDMSLARYAFDFYEITSRT
FT                   SVRAREAHIQMKAAALKTAQTRLFGLDGGISTQEENTERHTTEDVAPNLHTMLGVRNM"
FT   mat_peptide     <1. .24
FT                   /product="NIb replicase"
FT   mat_peptide     25. .840
FT                   /product="coat protein"
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SQ   Sequence 926 BP; 289 A; 176 C; 237 G; 224 T; 0 other;

gu144343 Length: 926  07-SEP-2010  Type: N  Check: 3153  ..

       1  gtttcgtatg aatgcagaca tcaagcaaaa gaagaagcca gttcgcttga
      51  tgctggaaaa gacccagcaa aggaaaaatc tgcgaagtta cctgccgcag
     101  ccggtgagca atcaagtaag ggtctcgaag aacgggatgt aaatgcagga
     151  acaactggca cgttcacaat cccgcgcatc aaggcgattt ctgagaaaat
     201  gcgccaacca aaggttaatg gggtgagtgc actgaatttt gagcatctgt
     251  tggtctacaa accaagccaa attgatatct ctaacgcaag ggcaactcag
     301  agtcaattta ataactggtt ctctgaagtt caaaaagcat acgatgttga
     351  agctggcgat atgggaacta tcttaaatgg tttgatggtt tggtgcatcg
     401  agaatggaac atcaccgaat gtgaatggag tttggacaat gatggatggt
     451  gaggaacaag tggagtttcc cctaaaaccg gtgatcgaaa atgcgaagcc
     501  tacttttagg cagataatgg cacatttttc tgatgtggct gaggcgtaca
     551  tagagatgcg taacaagagt gaaccataca tgccacggta tggtttggtg
     601  agaaatttgc gggatatgag tttggctcga tatgcatttg atttctatga
     651  gatcacatcc cgcacatccg tccgagcacg agaggctcac atccagatga
     701  aggcagcagc actgaaaact gcgcaaactc gcttgtttgg attggatggt
     751  ggcataagta cacaggaaga aaacacagaa agacacacca cagaggatgt
     801  ggcccccaac ctgcatacta tgcttggggt caggaacatg tagctgagtg
     851  ttttaactgg gatgaaatat agctataaat atgcagaata tagtttggct
     901  tttcttcgta ctagcttaac cattat