Sequence of DPV Potato virus S

Potato virus S strain WAKip1 coat protein gene, complete cds.

ACC No: GU319946

Dated: 2010-07-13 | Length: 885 | CRC: 1733116938

                
ID   GU319946; SV 1; linear; genomic RNA; STD; VRL; 885 BP.
XX
AC   GU319946;
XX
DT   13-JUL-2010 (Rel. 105, Created)
DT   13-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE   Potato virus S strain WAKip1 coat protein gene, complete cds.
XX
KW   .
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OS   Potato virus S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
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RN   [1]
RP   1-885
RX   PUBMED; 20467765.
RA   Cox B.A., Jones R.A.;
RT   "Genetic variability in the coat protein gene of Potato virus S isolates
RT   and distinguishing its biologically distinct strains";
RL   Arch. Virol. 155(7):1163-1169(2010).
XX
RN   [2]
RP   1-885
RA   Cox B.A., Jones R.A.;
RT   ;
RL   Submitted (30-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Virology, Department of Agriculture and Food Western Australia, 3
RL   Baron-Hay Court, South Perth, WA 6151, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .885
FT                   /organism="Potato virus S"
FT                   /host="Solanum tuberosum cv. Kipfler"
FT                   /strain="WAKip1"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collection_date="2006"
FT                   /note="ordinary strain"
FT                   /db_xref="taxon:12169"
FT   CDS             1. .885
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ADJ93809.1"
FT                   /translation="MPPKPDPTSSGETPQAIPLAPPPRHVEEHRVGPNQGHGQNEEAML
FT                   EQRLIRLIELMASKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPYSRFSIDELFKMEI
FT                   RSVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSSVYLDPAGTVEFP
FT                   TGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFD
FT                   TFDYVTNEAAIQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLG
FT                   AEIVRNHRNAINQ"
XX
SQ   Sequence 885 BP; 245 A; 218 C; 240 G; 182 T; 0 other;

gu319946 Length: 885  13-JUL-2010  Type: N  Check: 9108  ..

       1  atgccgccta aaccagatcc gacgagctca ggagagacac cacaagcaat
      51  accgcttgcg ccgccgcccc ggcacgttga ggagcataga gttggcccaa
     101  atcaagggca cgggcagaat gaagaggcta tgctggagca gaggctcatc
     151  aggttgattg aactcatggc ctcgaagagg cacaattcaa cattgagcaa
     201  catctctttt gagataggta ggccctcgct tgagccgacc cctgaaatgc
     251  gaaggaatcc ggagaatcca tactcgcggt tttcaatcga tgagctgttc
     301  aagatggaaa tccggtctgt gtccaacaac atggcgaaca ccgagcaaat
     351  ggcacaaatc actgctgaca tcgctggact tggggtcccc actgaacacg
     401  tcgcaggggt catactgaaa gtggtgatca tgtgtgcaag cgtgagtagc
     451  tccgtttatc tagatccagc agggactgta gagttcccaa ctggcgcagt
     501  gcctttggac tcgatcatcg caattatgaa aaatcgcgcg ggcttgagaa
     551  aagtgtgcag gctgtatgct ccagttgtgt ggaattacat gctagtccag
     601  aataggccac cttcggattg gcaggccatg ggattccaat ggaatgcacg
     651  cttcgccgca tttgacacat tcgattatgt gactaatgag gctgcaatcc
     701  agcccgtaga ggggctcata cgcaggccca cacctgagga aacaatagcc
     751  cacaatgcac acaagagtat ggcaattgac aagtcgaaca gaaatgagcg
     801  attggccaac actaatgttg agtacactgg agggatgctt ggcgctgaga
     851  ttgtgcgcaa tcaccgtaat gcgatcaacc aatga