Sequence of DPV Cucumber mosaic virus

Cucumber mosaic virus strain Rb segment RNA-3, complete sequence.

ACC No: GU327365

Dated: 2010-02-08 | Length: 2214 | CRC: -1746776720

                
ID   GU327365; SV 1; linear; genomic RNA; STD; VRL; 2214 BP.
XX
AC   GU327365;
XX
DT   08-FEB-2010 (Rel. 103, Created)
DT   08-FEB-2010 (Rel. 103, Last updated, Version 1)
XX
DE   Cucumber mosaic virus strain Rb segment RNA-3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Cucumovirus.
XX
RN   [1]
RP   1-2214
RA   Kim M.K., Choi H.S., Kwak H.R., Ko S.J., Lee S.H., Kim J.S., Kim K.H.,
RA   Cha B.J.;
RT   ;
RL   Submitted (17-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   Agricultural Microbiology Division, National Academy of Agricultural
RL   Science, Seodun-dong, 150. Kweonseon-Gu, Suwon, GyeongGi-do 441-707,
RL   Republic of Korea
XX
CC   GenBank Accession Numbers GU327363-GU327365 represent the complete
CC   genome of Cucumber mosaic virus strain Rb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2214
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA-3"
FT                   /host="Rudbeckia hirta var. pulcherrima"
FT                   /strain="Rb"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /collection_date="2005"
FT                   /note="subgroup: 1"
FT                   /db_xref="taxon:12305"
FT   gene            120. .959
FT                   /locus_tag="CMVRbRNA3MP"
FT   CDS             120. .959
FT                   /codon_start=1
FT                   /locus_tag="CMVRbRNA3MP"
FT                   /product="movement protein"
FT                   /note="MP"
FT                   /protein_id="ADC32111.1"
FT                   /translation="MALQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   gene            1257. .1913
FT                   /locus_tag="CMVRbRNA3CP"
FT   CDS             1257. .1913
FT                   /codon_start=1
FT                   /locus_tag="CMVRbRNA3CP"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="ADC32112.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVTAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2214 BP; 517 A; 527 C; 527 G; 643 T; 0 other;

gu327365 Length: 2214  08-FEB-2010  Type: N  Check: 8096  ..

       1  gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgctgtc
      51  cgcacatttg agtcgtgctg tccgcacatt ttcttttatc tttgtacagt
     101  gtgttagatt tcccgaggca tggctctcca aggtaccagt aggactttaa
     151  ctcaacagtc ctcagcggct acgtctgacg atcttcaaaa gatattattt
     201  agccctgaag ccatcaagaa aatggctact gagtgtgacc taggccggca
     251  tcattggatg cgtgctgata atgctatttc agtccggccc ctcgttcccg
     301  aagtaaccca cggtcgtatt gcttccttct ttaagtctgg atatgatgtt
     351  ggtgaattat gctcaaaagg atacatgagc gtccctcagg tgttgtgtgc
     401  tgttactcga acagtttcca ccgatgctga agggtccttg agaatttact
     451  tagctgatct aggcgacaag gagttatctc ctatagatgg gcaatgcgtc
     501  tcattacata accatgatct tcccgcttta gtgtctttcc aaccgacgta
     551  tgattgtcct atggaaacag ttgggaatcg taagcggtgt tttgctgtcg
     601  ttatcgaaag acatggttat attgggtata ccggcaccac agctagcgtg
     651  tgtagtaatt ggcaagcaag gttttcatct aagaataaca actacactca
     701  tatcgcagct gggaagactc tagtactccc tttcaacaga ttagctgagc
     751  aaacaaaacc gtcagctgtc gctcgcctgt tgaagtcgca attgaacaac
     801  attgaatctt cgcaatactt gttaacgaac gcgaagatca atcagaatgc
     851  gcgcagtgag tccgaggaat taaatgttga gagccctccc gccgcaatcg
     901  ggagttcttc cgcgtcccgc tccgaagcct tcagaccgca ggtggttaac
     951  ggtctttagc actttggtgc gtattggtat ataagtatgt gtgagtctgt
    1001  acataatact atatctatag tgtcctgtgt gagttgatac agtagacatc
    1051  tgtgacgcga tgccgtgttg agaagggaac acatctggtt ttagtaagcc
    1101  tacatcacag ttttgaggtt caattcctct tactccctgt tgagcccctt
    1151  actttctcat ggatgcttct ccgcgagatt gcgttattgt ctactgacta
    1201  tatagagagt gtgtgtgctg tgttttctct tttgtgtcgt agaattgagt
    1251  cgagtcatgg acaaatctga atcaaccagt gctggtcgta atcgtcgacg
    1301  tcgtccgcgt cgtggttccc gctccgcccc ctcctccgcg gatgctaact
    1351  ttagagtctt gtcgcagcag ctttcgcgac ttaataagac gttagcagct
    1401  ggtcgtccaa ctattaacca cccaaccttt gtagggagtg aacgctgtag
    1451  acctggatac acgttcacat ctattaccct aaagccacca aaaatagacc
    1501  gcgggtctta ttacggtaaa aggttgttat tacctgattc agtcacggaa
    1551  tatgataaga agcttgtttc gcgcattcaa attcgagtta atcctttgcc
    1601  gaaatttgat tctaccgtgt gggtgacagt ccgtaaagtt cctgcctcct
    1651  cggacttatc cgttaccgcc atctctgcta tgtttgcgga cggagcctca
    1701  ccggtactgg tttatcagta tgccgcatct ggagtccaag ctaacaacaa
    1751  attgttgtat gatctttcgg cgatgcgcgc tgatataggt gacatgagaa
    1801  agtacgccgt cctcgtgtat tcaaaagacg atgcgctcga gacggacgag
    1851  ctagtacttc atgttgacat cgagcaccaa cgcattccca cgtctggggt
    1901  gctcccagtc tgattccgtg tttccagaat cctccctccg atttctgtgg
    1951  cgggagctga gttggcagtt ctgctataaa ctgtctgaag tcactaaacg
    2001  ttttacggtg aacgggttgt ccatccagct tacggctaaa atggtcagtc
    2051  gtggagaaat ctacgccagc agatttacaa atctctgagg cgcctttgaa
    2101  accatctcct aggtttcttc ggaaggactt cggtccgtgt acctctagca
    2151  caacgtgcta gtttcagggt acgggtgccc ccccattttc atgggggcct
    2201  ccaaaaggag acca