Sequence of DPV Homalodisca vitripennis reovirus
Homalodisca vitripennis reovirus isolate Pauma1 segment 1, complete sequence.
ACC No: GU370362
Dated: 2010-09-28 | Length: 4475 | CRC: -589180405
ID GU370362; SV 1; linear; genomic RNA; STD; VRL; 4475 BP.
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AC GU370362;
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DT 28-SEP-2010 (Rel. 106, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Homalodisca vitripennis reovirus isolate Pauma1 segment 1, complete
DE sequence.
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KW .
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OS Homalodisca vitripennis reovirus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC unclassified Phytoreovirus.
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RN [1]
RP 1-4475
RA Stenger D.C., Sisterson M.S., French R.;
RT "Population genetics of Homalodisca vitripennis reovirus validates timing
RT and limited introduction to California of its invasive insect host, the
RT glassy-winged sharpshooter";
RL Virology 407(1):53-59(2010).
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RN [2]
RP 1-4475
RA Stenger D.C.;
RT ;
RL Submitted (30-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
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CC GenBank Accession Numbers GU370362-GU370373 represent the complete
CC genome of Homalodisca vitripennis reovirus Pauma1 isolate.
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FH Key Location/Qualifiers
FH
FT source 1. .4475
FT /organism="Homalodisca vitripennis reovirus"
FT /segment="1"
FT /host="Homalodisca vitripennis"
FT /isolate="Pauma1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2002"
FT /db_xref="taxon:411854"
FT CDS 30. .4412
FT /codon_start=1
FT /product="RNA-directed RNA polymerase"
FT /protein_id="ADN64813.1"
FT /translation="MSHVSYDKDILPTLISQFQAIINSDITKIDVSYEIECLLQRTLIL
FT WRNGEENLISNRDKYDMKGLFFKRPVNPKELQLRYASMYNDIFKVNNYGVPTEIITKHD
FT DVILSIINDELNKPLWWSLSDEDLHQSVLPEYKLQRYDEYISNLNFSLDKDVNDTTRVT
FT WLSDMEKDVTIELHNDLTPSGKKPVSKSRYISDRQSTEMDPHYVYHPIQALFLTILMIR
FT ATSAFGSEKVSADNPTFYSYGLRYMELLCNTIARGNNLYRTFPVIFSTEGKIVGTRLYS
FT HYPIKLRIILNDLTYLLTYKDIHNYSRKYMDINDEVLLYMLQYPNKGRELKKTVTRLNL
FT YYGLRFNAKTTDTGKTVNGVSYIHDHPIHKAANFTQPVLAAVNEFTSVSRCYEHESKIL
FT NKAVFSPTVKRYVFEDILSVKETGLPVLAKFCETLVDMRVNSTIITDIVFLRTLLNFGG
FT YSRSNQITDFKATIDDITVMNEKFLSNSDPAKSINSLLEWMGPKMTDCGYGLTKAIIEG
FT EISTASYPSANQAKTNIDTYITSRSAGIGNIKLIVNTGKKVYKTRSTSKSTFANVIGSK
FT IFDVNDVSTVPIMFSEFLSNLSQTERDKFIEQYDQGKITPSEVMRICGQNVIGSRSTTA
FT WRPVRPIYINVLQAHLAQSFIIGPHIDATTRQRRDRPTGLWFTGKELGIGFATLYQNGT
FT SDMIAPAIEASSTGKALSVLADCSSWDQTYLTATIIPYYEGIKKALAAHGIASQINFYM
FT IDSSRRDVQGMTILETIDWFNKFQEKRIFNASYLGELYSFVVKYMWSGRLDTFLMNSVQ
FT NGLITEKIAGDVFNQVNNIPLTWYQVAGDDAIMVYDASSITHFGQVDSIRNITVKNYEQ
FT ANHIINPQKTVVSHISGEYAKIYYYAGMHFRDPSIQLHESEKDSNASDIIERLRGFSQV
FT CFEYNKRAIGSLRVNSLYARLLAGLAYTIVVRKPSRSSSQVKDADNITPSKTSGPHDTY
FT KYFPPPGAIITPSAYSGGLGMTYTGISLNEVLFIRLHLSKIVETGLSTVSTINFSANET
FT LANALTKHFLKEKPEILKDLRLPVGTESIKSISYKSSDSVFSGGDFAQGLNMKRESLDA
FT TKVRISRQASDALGSIRVKLPNSLLYENIPYSALHQSFKQLAVDKDVARLTSESTLFRL
FT LEDESDTPRMKITSSYPVYDLFVISAIKSRNVESSGPIRYISTPTEGKMLESTIGSRTG
FT IQFRNKGYAGSQEIVRFIRQNGLIITEAQLIALVIKSGVLNSYNPKKTMTDLFEALSGD
FT PSTSSVLADFFIEEKPHWEDNAISVTIIGSLLENCDSRLENISNFVGVPAINMERDITR
FT MFKYIGYVYFAQRFILNNYNPDYINVQIKDEDLRLFLKSSKPVTNSKRNKSAQGKSHNP
FT AMDEVANTTEPGFHVTYVTNVNDSEADNLLDTLALVHPLAIPFLGNQIEKYAVTQSEI"
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SQ Sequence 4475 BP; 1554 A; 749 C; 904 G; 1268 T; 0 other;
gu370362 Length: 4475 28-SEP-2010 Type: N Check: 9533 ..
1 ggcgtttcac aacgtctgca tgtcacgtga tgagtcacgt tagttacgac
51 aaggatatat taccaacact aatttcacaa ttccaggcta ttatcaattc
101 tgatatcacc aaaatcgatg taagctatga gatagagtgc ttactacaaa
151 gaacgctaat actgtggcga aatggagagg aaaacttaat aagtaatcgg
201 gataaatatg atatgaaagg attgttcttt aaacgtccag ttaatccgaa
251 ggaattgcag ttaagatatg cttcaatgta taatgatata tttaaagtaa
301 ataactatgg cgtcccaact gaaataataa ctaaacacga tgacgtcatt
351 ctgtcaatca tcaatgatga gttaaacaaa ccgctgtggt ggtcactgag
401 cgatgaggat ttgcatcaat ctgtgttgcc ggagtataag cttcaaagat
451 atgatgaata tatttcaaac ttgaatttta gtttagataa agatgtcaat
501 gacactacac gtgttacgtg gctatcagat atggaaaaag atgtaactat
551 tgagttacat aatgacttaa ctccttcagg caagaagcct gtttcaaaga
601 gtagatacat aagtgataga caatcaacgg agatggatcc acattatgtt
651 tatcacccaa tacaagcatt gtttttaacg atattaatga ttagggcaac
701 ttcggcattt gggagcgaga aggtttcagc tgataatcca acattttact
751 cgtatggatt aagatatatg gagctgttat gtaatacaat cgcacgtggg
801 aataatttat atagaacgtt tccagttatt ttctctactg aaggtaagat
851 agtagggaca cgtttatatt cgcattaccc aattaagtta cggataatac
901 ttaatgacct tacatatttg cttacataca aggatataca taattattca
951 cgtaaatata tggatataaa tgatgaggta ctgctatata tgttgcagta
1001 tcctaataag ggaagggaac tgaagaagac tgttacacgg ctaaatttat
1051 actacggttt gcgattcaac gcgaaaacta ctgatacagg taaaacagtt
1101 aatggagtta gttatataca tgaccatcca attcataagg ccgcaaattt
1151 cactcaacct gttctagcgg cggtaaatga atttacatca gtttcacggt
1201 gttatgaaca tgaaagtaag atattaaata aagctgtatt ctcacctaca
1251 gtgaaacgat atgtgtttga agatatacta tctgtgaagg aaacgggatt
1301 accagtatta gcaaaattct gcgagacgtt agttgatatg agagtgaatt
1351 caacaattat aaccgatatc gtgtttttaa gaacgctttt aaattttggt
1401 ggatattcaa gatcaaacca aattactgat tttaaagcaa caattgatga
1451 cattactgtt atgaatgaga aatttctatc aaattcagat cctgcaaaat
1501 caataaattc attattagag tggatgggac caaagatgac tgactgtggc
1551 tatggattaa cgaaagcaat catagaaggt gagatatcta cagcgtcata
1601 cccatcagca aatcaagcaa aaacgaatat cgatacgtat ataacgtcta
1651 gatcggcagg tattggcaat attaaactaa ttgtcaatac ggggaagaaa
1701 gtttataaaa ctaggtcaac atcaaagtcg acattcgcga acgttattgg
1751 gtcaaaaata tttgacgtga acgatgtaag tacagtgcca ataatgttca
1801 gcgaatttct aagcaattta agtcagactg aaagagataa atttattgag
1851 cagtatgatc aaggtaaaat aacaccatct gaagttatgc ggatatgtgg
1901 ccagaacgtt ataggctcga gatccacaac tgcgtggagg ccggttcgcc
1951 caatttatat taacgttctt caagcacatt tggctcaatc atttatcata
2001 ggaccacaca tcgatgctac gactagacag cgtagggata ggccaacagg
2051 attgtggttt actggaaaag agttaggcat tggatttgcc actctatatc
2101 aaaatggtac atctgatatg attgcaccag ctatagaggc gtcttcaaca
2151 ggtaaggcgc tatcagtatt agcggattgt tcatcatggg atcagacata
2201 tctcactgca actataattc catattatga aggaataaag aaggctttag
2251 cagctcatgg aatagcgagt caaataaatt tctacatgat agattcaagt
2301 agacgcgacg tacaaggcat gacgatatta gaaacgatag attggttcaa
2351 caaattccag gaaaaacgta tttttaatgc gtcatactta ggtgaactat
2401 attctttcgt tgtaaaatat atgtggtcgg gtagattaga tacttttcta
2451 atgaattctg tacagaatgg gctaataacg gagaaaatag ctggggatgt
2501 gtttaatcaa gtgaataata taccattaac atggtatcaa gtggcaggtg
2551 acgatgcgat aatggtttat gacgcttcgt caataactca ttttggccaa
2601 gttgattcta ttcgtaatat aactgttaag aattacgaac aggccaatca
2651 tattataaat ccacaaaaaa cagttgtatc acatatttca ggcgaatacg
2701 ctaaaatata ttattatgcg ggcatgcatt ttagggatcc atcaattcag
2751 ttgcatgaat cggaaaaaga ttcgaatgca tcagatataa tcgagcggtt
2801 gagaggtttt tcacaagtgt gctttgagta taacaagcgt gcaataggta
2851 gtttgagggt gaatagcctg tacgcccgcc tgttggccgg gttagcatat
2901 actattgtag tacgcaaacc atctcgtagc tctagtcaag taaaggatgc
2951 tgataacatt acgccatcaa agacatcagg accacatgac acatataagt
3001 acttcccacc accaggcgcc attattactc catcggcgta ttcaggtgga
3051 ttagggatga cttatacggg catatcgttg aatgaggtcc tgtttatccg
3101 tttacattta tcgaaaattg tggagacagg tttatccacc gtctctacga
3151 taaatttttc agcaaatgag acactagcta atgctttaac caaacacttc
3201 ttaaaggaga aaccagaaat tttgaaggat ttaagattac cagttggaac
3251 cgagagcata aaaagcatct catataagtc ctcagatagt gttttctccg
3301 gaggagattt cgcacaagga ttgaatatga aaagagaatc attggatgct
3351 acgaaagtca gaatatcaag gcaagcatct gatgctttag gctcaatacg
3401 ggtcaagtta ccaaacagtt tactatacga gaacattcca tattcagcat
3451 tacaccaatc gttcaagcaa ttggccgtag acaaggacgt agctagactg
3501 actagcgaaa gtacattatt taggctatta gaagatgaat cagatacacc
3551 aaggatgaaa ataacttcat catacccagt gtacgattta ttcgttatat
3601 cagcaatcaa atctcgcaac gttgaatcat ccggtccaat taggtatata
3651 tctactccaa cggaaggaaa aatgttagaa tcaacgatag gatccagaac
3701 tggcatacag tttagaaaca agggatatgc tggttctcag gagatagtaa
3751 gatttattag gcaaaacgga ttaataataa ctgaagcaca actaatcgca
3801 ttagtaataa aatcaggcgt attaaattca tacaatccaa agaaaacgat
3851 gacggatttg tttgaagctc tgtccggaga tccatcaaca tctagtgtgt
3901 tagcggattt ctttattgaa gagaaaccac attgggaaga taacgcaatt
3951 tcagtgacta tcattggttc tctactcgaa aattgcgaca gtagactaga
4001 aaacataagt aattttgtcg gcgtaccagc aataaatatg gaaagagaca
4051 taacgcggat gtttaagtat ataggttatg tgtattttgc acaaagattc
4101 atactaaata actataaccc tgactatata aacgtccaaa ttaaggacga
4151 ggatttaaga ctattcttaa aaagttcaaa gccagttaca aatagtaaac
4201 gaaataagag cgctcaaggc aaaagtcata atccagcaat ggacgaagtg
4251 gctaacacta ctgagccagg atttcacgtt acatacgtta cgaatgttaa
4301 tgactctgaa gctgataatt tgctcgacac tttggcttta gtgcatccac
4351 ttgcgatacc ttttcttggt aatcagattg agaagtatgc cgtgacgcag
4401 agtgaaatat agtacagtaa aatcctgaca tgctaccatc tgtgggagga
4451 tgggaaagga cgtgtgataa atgat