Sequence of DPV Homalodisca vitripennis reovirus
Homalodisca vitripennis reovirus isolate Pauma1 segment 3, complete sequence.
ACC No: GU370364
Dated: 2010-09-28 | Length: 3180 | CRC: 1236310027
ID GU370364; SV 1; linear; genomic RNA; STD; VRL; 3180 BP.
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AC GU370364;
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DT 28-SEP-2010 (Rel. 106, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Homalodisca vitripennis reovirus isolate Pauma1 segment 3, complete
DE sequence.
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KW .
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OS Homalodisca vitripennis reovirus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Phytoreovirus;
OC unclassified Phytoreovirus.
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RN [1]
RP 1-3180
RA Stenger D.C., Sisterson M.S., French R.;
RT "Population genetics of Homalodisca vitripennis reovirus validates timing
RT and limited introduction to California of its invasive insect host, the
RT glassy-winged sharpshooter";
RL Virology 407(1):53-59(2010).
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RN [2]
RP 1-3180
RA Stenger D.C.;
RT ;
RL Submitted (30-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
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CC GenBank Accession Numbers GU370362-GU370373 represent the complete
CC genome of Homalodisca vitripennis reovirus Pauma1 isolate.
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FH Key Location/Qualifiers
FH
FT source 1. .3180
FT /organism="Homalodisca vitripennis reovirus"
FT /segment="3"
FT /host="Homalodisca vitripennis"
FT /isolate="Pauma1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2002"
FT /db_xref="taxon:411854"
FT CDS 33. .3098
FT /codon_start=1
FT /product="major core protein"
FT /protein_id="ADN64797.1"
FT /translation="MDLTGTALGGAGDVKSVLLTESSSHFTPVEVYNISEDLKTVKITA
FT VIADKSTVSRVPLPVSFVSAKDVERVFKIIPLRIGSTSMIIDTPRVVFLLMYNESIYDD
FT FMQIKNVPAFEPSVTMHRVEAVFSLMQKYCCSMLDGVPTYSTTVADIPVKAVTMSEFGD
FT RDMDELANYLNTEYEILSAQAQNRALYVRSAAIDVPFPFGDDLNNADVERKNNYHQYRV
FT PFHSLELALYQLAGELLRTQYCHPTVALEFLRRRAPPFLTVEDSVAERMMRAGSGVLMP
FT RPVMELLDYTLVYRSPLALSRLATRLSSKISIKLHMRMVTEVQKTISDMLGVSSSTSTL
FT STSSIQSLNLIGVENLTLYMARSLLNPNFAYAQISELTGLAFEDFVYGSCLLLIQAMLP
FT PSAILASDRIMINNRLAYFLIRYIAMPATYDRLTANNVVPHYYNHDRWQITTVDYLVAI
FT YTNLLAGERRLNEVIRLYFRGQVPVAVNAINIPAAQTAYKIDERQSISAPYLFGAPINA
FT MAPDTRLLEFKNGLNLPPRSPILPTNIEGANVISLQNLMNKVDVINAIYLSGFGRETPS
FT MWIRNASINTAYLTKLISDVSNLSAIYEAVLANTYANAINVYCDTEYHPEIPLNWKIPY
FT TIKPKDFLFAVFGLIPMYQLSTEAVPDFFAGSEDILILQLIQAVYRMLGQRLGADPTQY
FT FHLEEVLSSVSRIVSILTHTSVDVKIYFTDSPHSLTFNKPIWDRFIRRVEQAQLPPLYD
FT IIFQQISNVYTLLQGMQDLLPICDYFYIARNCGWVARGSSESIIAATSIYSNQAVVQSE
FT INSFTDACNLRLRARRVDNVSLTTDLDDMFYNLSSISSDEFVRSDARGRTQLRVAAVPV
FT IKVNMRARYVLNIRTEDGNMLRKPEIKKMMYSDFIDFLMKHQKEPHAPIIEIPITIGLN
FT NIGATTSTAIRSDSKTVDEYFKAYLGAQVVIPMDAIVIEQLGSFDELRNKLSNNVVTRD
FT KTWEIWNDVEASYVPIGNHPVQLDPIGHPAEI"
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SQ Sequence 3180 BP; 1008 A; 564 C; 681 G; 927 T; 0 other;
gu370364 Length: 3180 28-SEP-2010 Type: N Check: 6372 ..
1 ggcagatctt gactatcgta tttacggcta ggatggattt gactggtacc
51 gccttgggcg gtgcaggtga tgtaaagagt gttctattaa cagaatcctc
101 gtctcatttt actccagttg aagtatataa tatatctgaa gatttaaaga
151 ctgttaaaat aacagctgtg atagcggata aatcaacagt ctcgcgtgtt
201 ccactaccag tatcattcgt aagcgctaaa gatgttgaac gtgtgtttaa
251 gattattcca ttacgtattg gatcaacttc aatgattatt gacacaccac
301 gtgtggtgtt tttattaatg tacaatgagt caatatatga tgacttcatg
351 caaattaaaa atgtgccagc atttgaacca agcgttacaa tgcatagagt
401 agaggctgta ttctcgttaa tgcaaaaata ttgttgcagt atgttagatg
451 gagttccaac atactctacc actgtcgcgg acatcccagt gaaggcagtc
501 acgatgtctg agttcggtga tagagatatg gatgaattag caaattattt
551 aaatactgaa tatgaaatat tatcggcgca ggctcaaaat agagccttat
601 atgtgaggtc ggcggcaata gacgttccat ttcctttcgg ggatgatttg
651 aataatgccg acgtagaacg gaaaaacaat tatcatcaat atcgggtacc
701 attccacagc cttgaacttg cattgtatca attagctggt gaattgttga
751 ggacacagta ttgtcacccg acggttgcgc ttgaattttt aaggcgtcgg
801 gccccgccat tcttgaccgt agaggactca gttgctgaac ggatgatgcg
851 tgcaggatcc ggggtattaa tgccgagacc agtcatggaa ttgcttgact
901 atacgctggt ctatagatca ccactggcgt tgtcacgtct ggcgactagg
951 ttaagttcga agatttcgat aaagttacac atgcgtatgg taaccgaagt
1001 acaaaaaaca atttcagaca tgcttggagt ttcaagtagt acatcgacgt
1051 tatcgacttc atctatacaa agtctgaatc tgattggagt cgagaatttg
1101 actttatata tggcacggtc attattaaat ccgaattttg catacgctca
1151 aataagcgaa ttaactggtt tggcgtttga agatttcgta tatggatctt
1201 gtttgttact tatccaagcg atgcttccac catctgcgat attggcatct
1251 gataggataa tgataaataa taggcttgca tattttctaa tccgttacat
1301 agcaatgcca gccacatatg atagattgac ggctaataat gtggtgcccc
1351 actattataa tcacgacaga tggcaaataa caacagtaga ttatttagtg
1401 gctatataca ctaatctact tgcaggagag aggagactaa atgaagtaat
1451 aaggctctat ttccggggtc aagtaccagt agccgttaat gcaataaata
1501 tacctgctgc tcaaacagct tataagatag atgaaaggca aagtatatct
1551 gctccatatt tgttcggagc tccaatcaac gccatggctc cagacacgag
1601 actgttagag ttcaaaaatg gattaaattt accgcctaga tccccaattc
1651 tgccaacgaa cattgaaggt gcgaacgtta taagtttgca gaatttaatg
1701 aataaagttg acgttattaa cgccatatat ctaagtggct ttggaagaga
1751 aacgccatca atgtggatca gaaatgcatc aataaatact gcatacttaa
1801 ctaaactaat atctgatgtt agtaacttga gcgcaatata tgaagcggtg
1851 ctagcaaaca cttacgccaa tgcgataaat gtgtattgcg atacggaata
1901 ccaccctgag attccgttaa attggaaaat tccatacact attaagccga
1951 aagacttctt gtttgcagta tttggactaa taccaatgta tcaattgagt
2001 actgaggcag ttcctgattt tttcgcagga agtgaggaca tactaatact
2051 gcaactaata caggctgttt atagaatgtt gggtcaacga ttaggcgctg
2101 acccaactca atattttcat ctggaagaag tattgagttc tgtatctaga
2151 attgtgtcta tattgacaca tacctcagtg gatgtaaaaa tatattttac
2201 tgattcgccg cattcattga cattcaacaa acctatatgg gatagattta
2251 ttaggcgggt agaacaagca caactaccgc cactatatga tataattttc
2301 cagcaaatta gcaatgtgta tacattatta caaggtatgc aggatctgtt
2351 acctatatgc gattactttt atatagcgcg taattgcgga tgggtagcta
2401 gaggatcgag tgaatcaata atagcggcta cgtctatata ctctaaccaa
2451 gcggtagtgc agagtgaaat aaactcattt acagatgcat gtaacttaag
2501 attacgtgct cgcagggtgg acaatgtatc attaacgacg gatttagatg
2551 atatgtttta taatttatca tctataagtt cagatgaatt tgtaagatct
2601 gacgcacgcg gcaggacaca gttacgtgta gcggcagttc cagtaattaa
2651 agtaaatatg cgagcgcgtt acgtgctaaa cattcggact gaagatggaa
2701 acatgcttag aaagcccgag attaaaaaga tgatgtatag cgacttcatt
2751 gactttctaa tgaagcatca aaaagagcca catgctccaa ttatcgaaat
2801 acctataact attggattaa ataatattgg agctacaacg agtacggcta
2851 taagaagtga cagtaaaact gtagatgaat attttaaagc ttacctagga
2901 gctcaagttg tgattccaat ggatgcaata gtcatagagc agttaggatc
2951 atttgatgag ctgaggaata aactttccaa caatgtggta acacgcgata
3001 agacatggga gatttggaac gatgtagaag catcttatgt tccaatcgga
3051 aatcatccag ttcagttgga tccaatcggt catcctgcag aaatctagtg
3101 cgttatcaga atgatccaaa gagtgtccgg ggaactcgcc tagttgacgc
3151 ttgcggttat ggtagttaaa gatatatgat