Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus isolate MNSV-HM, complete genome.
ACC No: GU480022
Dated: 2010-03-08 | Length: 4267 | CRC: 599847852
ID GU480022; SV 1; linear; genomic RNA; STD; VRL; 4267 BP.
XX
AC GU480022;
XX
DT 08-MAR-2010 (Rel. 104, Created)
DT 08-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE Melon necrotic spot virus isolate MNSV-HM, complete genome.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4267
RA Wu H.J., Gu Q.S., Tian Y.P., Wen S.H.;
RT ;
RL Submitted (19-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Biotechnology Centre, Zhengzhou Fruit Institute, The Chinese Academy of
RL Agricultural Sciences, South of East Hanghai Road, Zhengzhou, Henan 450009,
RL China
XX
FH Key Location/Qualifiers
FH
FT source 1. .4267
FT /organism="Melon necrotic spot virus"
FT /host="Cucumis melo L. (melon)"
FT /isolate="MNSV-HM"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Apr-2007"
FT /db_xref="taxon:11987"
FT CDS 89. .2464
FT /codon_start=1
FT /transl_except=(pos:893. .895,aa:OTHER)
FT /product="89K protein"
FT /note="putative RNA-dependent RNA polymerase; replicase;
FT produced by a readthrough of the amber codon"
FT /protein_id="ADD17683.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVAAVVGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLNGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLIERVFFVEND
FT KKELEPAPKPLSGAFDRLAWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRRDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALRWEHSVY
FT LDAFCHDSYLAELLEWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEIFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 89. .895
FT /codon_start=1
FT /product="29K protein"
FT /protein_id="ADD17681.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVAAVVGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE
FT DAEEESDTGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLNGWLSHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT CDS 2443. .2829
FT /codon_start=1
FT /transl_except=(pos:2638. .2640,aa:OTHER)
FT /product="14K protein"
FT /note="produced by a readthrough of the amber codon at
FT 2638-2640"
FT /protein_id="ADD17680.1"
FT /translation="MDSQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAIAESKQG
FT VMGASTYIADKIKVTINFNFXCMACYRCDSSPGDYSGALLILFISFVFFYITSLSPQGN
FT TYVHHFDNSSVKTQYVGISTNGDG"
FT CDS 2443. .2640
FT /codon_start=1
FT /product="7K protein"
FT /protein_id="ADD17679.1"
FT /translation="MDSQRTVEQTNPRGRSKERGDSGGKQKNSMGRKIANDAIAESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2816. .3988
FT /codon_start=1
FT /product="42K protein"
FT /note="coat protein"
FT /protein_id="ADD17682.1"
FT /translation="MAMVKRINNLPTVKLAKQALPLLANPKIVNKAIDVVPLVVQGGQK
FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPANDLTVNNGDVNVGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRFTYIPTTGS
FT TSTGRVSILWDRDSQDPLPIDRAAISSYAHYADSAPWAENVLVVPCDNTWRYMNDTNAV
FT DRKLVDFGQFLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSFSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGSLTFTGNSKLVGNSLNVT
FT SSGASALTFTLNSTGVPNSSNSSFSVGTVVALTRVRMTITRCSPETAYLA"
XX
SQ Sequence 4267 BP; 1077 A; 894 C; 1062 G; 1234 T; 0 other;
gu480022 Length: 4267 08-MAR-2010 Type: N Check: 205 ..
1 ggattactct agccggatcc ccgactctct tatttctcgt gagttagttc
51 gtgtattgat tatctgtctt aatcagtata ggttagcaat ggatactggt
101 ttgaaatttc ttgtttctgg aggtttagcc acctcgtctg ttatcaggaa
151 agtgagtgct gtgagttcat tggattcgtc cctcccttca tcatctatat
201 tatctgccat tcatgggtct tggactagtg ctatcagcca cgattgtagt
251 aaaattgcca aggttgccgc cgtggttgga attggttatc ttggggttag
301 gattggtgcc gcttggtgcc gtcgtactcc cgggataacg aattccataa
351 tcacctatgg ggaagaagtg gttgagcaag taaaggtaga tattgatgag
401 gatgctgaag aggagtccga tactggtgag gaaattgtgg ttggcacgat
451 aggtattggt atacatacaa acgtcaaccc tgaagttcga gctaagcgca
501 gacatagatc gaggccattc atcaagaaga tcgtaaattt gactaagaat
551 cacttcggtg gatgtcccga ctcaagtaaa tcgaacgtca tggctgtaag
601 caaatttgtt tatgaacaat gtaaacagca caattgtctt ccacatcaaa
651 cgagattgat catgagtatt gcagttccat tggtgctaag tcccgatatg
701 tacgacattt ccagtaaagc tctgctaaac agcgagatat tgacagaaaa
751 cagagccacg ctggaccgcc tcaaaactct taatgggtgg ctatcacact
801 tggtgtgcca tccccttagc gcgaaagcct ggaggcgggc aattgacaac
851 ttgtgtggtc ttccagattg gaaggctttc aagttggtca actaggggtg
901 cctagaggag ctcgctgggt tctgtacttc ggtacggaga gggacacacc
951 cagacatgac cgagtttcct caggatcgtc ccattaagac acgcaaactg
1001 tattgtttag ggggagttgg gactagcgtg aagttcaacg tgcacaataa
1051 ctctctagct aaccttcggc gcggtctaat tgagcgcgtt ttcttcgttg
1101 aaaatgataa gaaggaacta gagcctgccc ctaaacctct tagtggtgcg
1151 tttgaccgct tagcctggtt tcgtcggaaa ctccacaata ttgtgggtac
1201 tcattccagt attagtccag gtcaattctt ggacttctat actggcagga
1251 ggcgcacgat ttatgaaggt gctgtgaaat cgttggaggg gttaagtgtt
1301 caacgaagag atgcctatct gaagacgttt gttaaagcgg agaagattaa
1351 taccactaag aagcctgacc cagctccgcg ggttatacaa ccgaggaacg
1401 taagatataa cgttgaggtt ggtcgttatc tacgtaggtt tgagcattac
1451 ctctatcgag gaattgacga aatctggaat ggccccacca taattaaagg
1501 gtacactgtc gagcaaattg ggaaaatcgc ccgtgatgct tgggactctt
1551 ttgtaagtcc tgtagcaatc gggtttgaca tgaaaaggtt cgaccaacat
1601 gtatcctccg acgctcttag atgggaacat agtgtttatc ttgatgcttt
1651 ttgccacgac tcttatcttg cagaattatt agagtggcaa ttagttaata
1701 agggcgtcgg gtatgccagt gatggaatga tcaaatataa ggttgatggg
1751 tgccggatga gtggtgacat gaatacagct atgggtaact gtctgattgc
1801 ttgtgccatc acacatgatt tcttccgtag tcgtggtatc agggcgcgtt
1851 tgatgaacaa tggggatgac tgtgtcgtaa tatgcgaaaa agaatgtgcc
1901 gcggtggtta aagccgacat ggtaaggcac tggagacaat tcgggtttca
1951 atgcgaactc gagtgtgacg cagaaatctt cgagcaaatt gagttttgtc
2001 aaatgcggcc tgtgtatgac ggggagaaat atgtgatggt gcggaatccg
2051 ttggttagtc tatctaaaga ttcctactca gtcggccctt ggaatggaat
2101 caaccatgca cgcaagtggg tgaacgcagt tggcttgtgt ggcttatccc
2151 tcactggtgg aattcctgtt gtccagagtt attataatat gatgattcgc
2201 aacacccaat ccgtgaacag ttctggcata cttcgcgatg tcagttttgc
2251 cagtggattt cgggagctag cacgattggg taacaggaaa agtggtgcca
2301 tatctgaaga cgcccgtttt agcttttatc tcgcatttgg cattactcca
2351 gatttacaac gtgccatgga aagtgactat gatgctcata ccatagagtg
2401 gggtttcgtg ccccagggaa atcctagaat acagccaatc tcatggactc
2451 tcaacgaact gtagaacaaa ctaatcctcg gggaagaagt aaagaacgtg
2501 gtgacagcgg gggaaaacaa aagaactcaa tggggcgaaa gatagccaat
2551 gacgctatcg ctgaatcgaa gcaaggagtt atgggtgcta gcacatacat
2601 tgctgataaa attaaggtga ccattaactt taatttttag tgtatggcct
2651 gttatcgttg tgactccagc cccggggatt actccggagc attgcttata
2701 ttatttatct catttgtttt cttttatatt acctcgctta gcccgcaagg
2751 aaatacttac gttcatcact tcgataattc ttccgttaaa acacaatacg
2801 ttggcatctc tacaaatggc gatggttaaa cgcattaata atctaccaac
2851 agtgaagctc gctaagcagg ctctacctct gctagcgaat cctaaaattg
2901 taaataaggc tatagatgtg gttcctttgg tcgttcaagg tggtcagaaa
2951 ttgtctaagg ctgctaagcg actgcttggc gcttatgggg gcaacatttc
3001 gtacactgag ggtgccaagc caggtgcaat atcagctcca gtcgccatca
3051 gtcggcgagt ggctggtatg aagcctaggt ttgtccgatc agaaggatct
3101 gtgaagatag ttcataggga gtttattgcc tctgttcttc ccgcaaatga
3151 tctcaccgtt aataatggtg acgtcaatgt tggtaagtat agagtcaatc
3201 ccagcaataa cgctttattt acatggcttc agggacaagc acaattatat
3251 gatatgtaca gatttactcg gctccgtttc acctatattc caactaccgg
3301 atctacttcc actggtcgtg tctctatcct ttgggataga gattcacaag
3351 accccctccc cattgatcgt gctgccatta gctcttatgc tcattacgct
3401 gactcagcgc cttgggctga gaatgtccta gtggttccgt gtgacaatac
3451 gtggaggtac atgaatgata ctaatgctgt cgaccggaag ttggttgatt
3501 ttgggcagtt tctctttgca acttattctg gtgctggtag caccgcccat
3551 ggtgaccttt acgttgagta tgctgtggaa ttcaaggatc cccagcctat
3601 cgctgggatg gtttgcatgt ttgatcgctt ggtctctttc tctgaagttg
3651 gatccactat caagggagtc aattacattg ctgatcgtga tgtgataact
3701 accgggggca atattggtgt taacatcaat attcccggga cttatcttgt
3751 cacgattgta cttaatgcta catcaattgg ttccctcacc ttcactggta
3801 actctaaact tgtaggcaat agtctcaatg ttaccagcag tggtgcatct
3851 gctcttacgt ttacccttaa ctctacaggt gtgcccaaca gtagtaattc
3901 ttcattctct gtgggtaccg tcgttgcatt gactagggta cgtatgacga
3951 tcactcgctg ctctccggaa acagcctacc tcgcctaatt taatttactg
4001 cactccaaat ctggtctcct tattcctacc tgttctcagc cagatctctg
4051 ttctggtgtc ctatagacgt ccttgtcgtg tgtagtgcgg tctggctacc
4101 cgtaacggcg tatcggcttg ggtcttcgat gattaggctc cggaatgtac
4151 gacatagctg aagatggatg gagtttggta gatcaccgct agcaaaatac
4201 actctgtgtg gggcgtgcta gtggatagtc atgtatgttt gagatgggtt
4251 gtaggcccat cccgccc