Sequence of DPV Plum pox virus
Plum pox virus isolate ISPaVe11 polyprotein gene, partial cds.
ACC No: GU550509
Dated: 2010-03-17 | Length: 2587 | CRC: 341812215
ID GU550509; SV 1; linear; genomic RNA; STD; VRL; 2587 BP.
XX
AC GU550509;
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DT 17-MAR-2010 (Rel. 104, Created)
DT 17-MAR-2010 (Rel. 104, Last updated, Version 1)
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DE Plum pox virus isolate ISPaVe11 polyprotein gene, partial cds.
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KW .
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OS Plum pox virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-2587
RA Di Nicola E., Ilardi V.;
RT "Silencing for wide range PPV resistance";
RL Unpublished.
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RN [2]
RP 1-2587
RA Di Nicola E., Ilardi V.;
RT ;
RL Submitted (14-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL CRA-PAV, CRA, Via C.G. Bertero, 22, Rome, IT 00156, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .2587
FT /organism="Plum pox virus"
FT /host="Prunus persica"
FT /lab_host="Nicotiana benthamiana"
FT /strain="M"
FT /isolate="ISPaVe11"
FT /serotype="M"
FT /mol_type="genomic RNA"
FT /country="Greece"
FT /db_xref="taxon:12211"
FT 5'UTR <1. .120
FT CDS 121. .>2587
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ADD69809.1"
FT /translation="MSTIVFGSFTCHLDAAIHQDNADRLAKAWTRPENRQVSNVHLLCR
FT RAAKSLINTYESATASAWKGLEEKLQPMFAKREFSKTITKRKGLRCFKESSEKFIEKKL
FT KKQYKEERERFQFLNGPDAIVNQISVDKCEASVWVPFPHIIEKPNFKTPSMKKKVVFTK
FT VRMSEASLQLFMRRVAANAKANGQKVEIIGRKRVVGHYTTKSRLTYFRTHVRHLDGSKP
FT RYDLVLDEATKKILQLFANTSGFHHVHKKGEITPGMSGFVVNPMNLSDPMHVYDTDLFI
FT VRGKHNSILVDSRCKVSKEQSNEIVHYSDPGKQFWDGFTNSFMQCKLRETDHQCTSDLD
FT VKECGYVAALVCQAIIPCGKITCLQCAQKYSYMSQQEIRDRFSTVIEQHEKTVMDNYPQ
FT FSHVLAFLKRYRELMRVENQNYEAFKDITHMIGERKEAPFSHLNKINELIIKGGMMSAQ
FT DYIEASDHLRELARYQKNRTENIRSGSIKAFRNKISSKAHVNMQLMCDNQLDTNGNFVW
FT GQREYHAKRFFRNYFDVIDVSEGYRRHIVRENPRGIRKLAIGNLVMSTNLAALRKQLLG
FT EECIHFEVSKECTSKRGENFVYQCCCVTHEDGTPLKSEIISPTKNHLVVGNSGDSKYVD
FT LPTAKGGAMFIAKAGYCYINIFLAMLININEDEAKSFTKTVRDTIVPKLGTWPSMMDLA
FT TACHFLAVLYPETRNAELPRILVDHEAKIFHVVDSFGSLSTGMHVLKANTINQLISFAS
FT DTLDSSMKTYLVGGLEVDKCDEFKNVKLLIRSIYKPQIMEQVLKEEPYLLLMSVLSPGV
FT LMALFNSGSL"
FT mat_peptide 121. .1047
FT /product="P1"
FT /note="proteinase"
FT mat_peptide 1048. .2418
FT /product="helper component proteinase"
FT /note="HC-Pro; silencing suppressor"
FT mat_peptide 2419. .>2587
FT /product="P3"
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SQ Sequence 2587 BP; 834 A; 512 C; 574 G; 667 T; 0 other;
gu550509 Length: 2587 17-MAR-2010 Type: N Check: 9298 ..
1 caaaatttta tgcgatcaaa tcaatctcaa gctatcaaaa ttttctaaat
51 ctcacttgaa agatcaagaa tcaacaaaga acattcgtca aatttttcac
101 caaatttact gcaagtcaag atgtcaacca ttgtatttgg ctcatttact
151 tgccacctcg atgcagctat ccaccaggat aatgcagaca gattggcaaa
201 ggcctggacc cgtccagaga accgccaagt cagtaacgtg catctactgt
251 gccgaagagc ggcaaaaagt ctcataaata catatgagag tgcaacagct
301 agtgcttgga aagggctgga ggagaagttg caacctatgt ttgctaagcg
351 agagtttagc aaaacaatca caaagagaaa agggcttcgg tgcttcaaag
401 aaagctctga aaaatttatc gaaaagaagc tcaagaaaca gtataaagag
451 gagcgtgaga gattccaatt tctcaacggt ccagatgcaa tagtcaacca
501 aatcagtgtt gacaaatgtg aagcttcagt atgggtgcca ttccctcata
551 ttattgagaa acctaacttt aaaacaccat caatgaaaaa gaaggtagtg
601 ttcactaagg ttaggatgtc cgaggcatca ctacaacttt tcatgaggag
651 ggttgctgca aacgccaagg caaatggtca aaaagttgag atcatagggc
701 gtaagcgtgt agtcggtcac tacacaacga aaagtcgtct gacatacttt
751 cgcacacatg ttcggcactt ggatggttca aaaccacgct atgaccttgt
801 gttggacgag gcaaccaaga agattctgca actgtttgca aacacaagtg
851 gttttcacca tgtccacaag aaaggggaga taacaccagg aatgagcgga
901 tttgtggtga atcccatgaa tctatcggac ccaatgcatg tgtatgacac
951 ggatcttttt atagttcgtg gaaaacacaa ctccattctt gttgactcac
1001 ggtgtaaggt ttccaaagag cagagcaatg agatagttca ctactctgac
1051 ccaggcaaac aattttggga tggtttcacc aattcattta tgcagtgcaa
1101 actacgcgaa actgatcatc agtgcacatc tgacctggac gtgaaggagt
1151 gtggttatgt tgcagcactt gtgtgccaag cgataatccc ttgtggaaaa
1201 attacatgtc tgcaatgtgc tcaaaagtac tcttacatgt cacaacagga
1251 aatacgtgat agattttcga cagtaattga gcagcatgag aaaacagtga
1301 tggataacta tccacaattt tcacatgttc ttgcttttct aaagaggtat
1351 cgtgaattga tgcgcgtgga aaatcagaat tatgaagctt tcaaggatat
1401 cacgcacatg ataggtgagc gcaaagaagc acctttttcc catctcaaca
1451 agattaatga attaatcatt aagggtggta tgatgagcgc acaagactac
1501 atagaagcct cggatcatct gcgcgaacta gcacgatatc agaagaatcg
1551 cacagagaac attaggagcg gatctataaa ggctttcagg aacaaaatct
1601 catcaaaagc acatgtcaat atgcagctta tgtgtgataa tcaacttgat
1651 actaatggca atttcgtgtg gggacagaga gagtatcatg ccaaacgctt
1701 ctttaggaat tatttcgatg tgatcgatgt tagcgagggc tacagacgtc
1751 atattgttcg tgaaaatcct agaggcatcc gcaaattggc cattggcaac
1801 cttgtcatgt caacgaatct ggcagcacta cgtaagcagc tcttgggtga
1851 agagtgcatt cattttgagg tctcaaagga atgcactagc aagcgagggg
1901 aaaattttgt ataccaatgt tgctgtgtca cacacgaaga cggtacacca
1951 ctgaagtctg aaataataag tccaacaaag aatcatttag ttgttggtaa
2001 ctcaggtgat tcgaagtatg tggatttgcc cacagcaaag ggaggtgcaa
2051 tgttcatagc aaaggcaggt tattgttaca tcaacatttt ccttgctatg
2101 ctgatcaaca taaatgaaga tgaagcaaaa agtttcacaa agacagtgcg
2151 tgacactatt gtacccaagc ttggaacatg gccatcgatg atggacttag
2201 ctacagcttg ccactttctc gcagttctct acccagaaac tcggaatgct
2251 gagcttccac gaatactcgt tgatcacgaa gcaaagatct ttcatgtggt
2301 tgactcattc ggatcactgt caactggaat gcatgtcttg aaagcgaaca
2351 caatcaatca acttattagc tttgctagtg atacattgga ttcaagcatg
2401 aaaacatacc tggttggagg tcttgaagtg gataagtgtg acgaattcaa
2451 aaatgtcaag ctcttgatca gaagcattta caagccacaa atcatggagc
2501 aggtgcttaa ggaagaacca tatttactgc tcatgagtgt tttgtcacct
2551 ggtgtcttaa tggcgctgtt caatagcggc tcattgg