Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate KOR1 polyprotein gene, partial cds.
ACC No: GU563320
Dated: 2011-01-26 | Length: 2543 | CRC: -1216752466
ID GU563320; SV 1; linear; genomic RNA; STD; VRL; 2543 BP.
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AC GU563320;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate KOR1 polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2543
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2543
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2543
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="KOR1"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2412
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73015.1"
FT /translation="GNNSGQPSTVVDNTIILMIVVEYCREVMAHEGIEMKYKYMCNGDD
FT LILNAPDEEIPIIQSRFKNLFAECGLNYDFDDVHKEIDTIEYMSHSFARKDGFFIPKLK
FT KERIVAILEWERGDEVMRTRSALNAAYIESFGYDDLMTEIERFAVFWASERGCEYPLLD
FT RKRVEGLYLDEHTDINEEWLSGILPPSFENCYIDLQVIDRPQSSNMTKREEEVTSKIRM
FT GIEAPITFVTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKVRVASELIG
FT GPVLVEDTSLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKV
FT GDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWSRTFAEMMAEEKNMISHRFRALSL
FT VRDFLKNSSYFNFAKGVDRDFFIDVQAIDKDEIESEITKLKELWRNNKPTRTRSPFESR
FT RLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGEVISPESSEDEEQRTNKGKAPMEP
FT PTEQSQPEKSVGEDEEKHKKTRFRIRAGGGDGKRDDIDKIPTNALEFRKSFKPPKVSQA
FT AYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEF
FT YRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRK
FT IMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIK
FT HQILAANVGRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE"
FT mat_peptide <1. .597
FT /product="NIb"
FT mat_peptide 598. .1275
FT /product="HAM1-like protein"
FT mat_peptide 1276. .2409
FT /product="CP"
FT 3'UTR 2413. .2543
XX
SQ Sequence 2543 BP; 830 A; 399 C; 629 G; 685 T; 0 other;
gu563320 Length: 2543 26-JAN-2011 Type: N Check: 1320 ..
1 ggcaacaata gtggtcagcc ctcaactgtt gttgacaaca ccataatttt
51 gatgattgtg gttgagtact gtagagaagt gatggcacat gaaggtattg
101 aaatgaaata taaatacatg tgtaatggag atgacctcat tcttaatgcg
151 cctgatgaag aaattccaat aattcagagt cgttttaaga atttgtttgc
201 agagtgtggt ttgaactatg actttgatga tgtccacaag gagatagaca
251 caatagagta tatgagccac tcatttgctc gcaaagatgg atttttcatt
301 ccaaagttga agaaggagag aatagttgca atacttgagt gggaaagagg
351 agatgaggtc atgaggacga gaagcgctct taatgcagct tacattgaaa
401 gttttggtta tgatgattta atgacagaga ttgaaaggtt tgctgtgttc
451 tgggcatctg aaaggggttg tgagtacccg ttattagata gaaagcgagt
501 tgaagggctt tacttggatg aacacactga tattaatgag gagtggttga
551 gtggcatctt accaccatct tttgagaatt gctacattga tttacaggtg
601 atagacaggc ctcagtcatc gaacatgact aagagagagg aagaagtcac
651 aagtaaaatc cggatgggga ttgaagcacc aattacattc gtaacaggga
701 atgcacaaaa attgaaagaa gtaaaacaaa tctttggtcc cactattcca
751 atcatctctc ggaaagttga cttgccagaa ccacaaggaa cagttgagga
801 aattattaaa gaaaaagtac gtgtagcgtc tgagttgatt ggagggccag
851 ttctcgtaga agatacaagt ttgtgttttg atgctctcaa tggtctccca
901 ggaccataca ttaagtggtt tatggaaggg attgggctag aaggattata
951 taagttggtg gagccgtatc aaaataaaat ggctagtgct ctctgcgtgt
1001 ttgcttttgt aaataaagtt ggtgatgatc ctataatctt taagggtgtg
1051 ctaagaggtg agattgtaat gccacgcgga ccaaattcat ttggatggga
1101 cccaattttc cagccactta actggagtag gacatttgct gagatgatgg
1151 ccgaggagaa gaatatgata tctcatcgat ttcgagctct gtcgttggtg
1201 agagattttt tgaagaactc aagctacttc aactttgcaa agggcgttga
1251 tcgtgatttc ttcattgatg tccaagcaat tgacaaggat gagattgaat
1301 ctgaaataac aaaattgaaa gaattgtgga ggaacaacaa gccaactaga
1351 actcgaagtc catttgaatc aaggcggctt cgtgcccctc aagtagctcg
1401 tgtgaatgag ctgctcaaac aactgaaaga tgctgggatt caaacaagta
1451 aaaggccatg tggagaacct gatgaagggg aagttattag cccagagtca
1501 agtgaggatg aggagcaacg aacaaacaaa ggaaaagcac ctatggaacc
1551 gcctactgag caaagtcaac cagagaagtc tgtaggtgag gatgaggaga
1601 aacataaaaa gacaaggttc agaataagag ctggtggtgg agatggaaag
1651 agagatgata tagataagat tccaaccaat gctctagaat ttcggaagag
1701 tttcaaacca ccaaaagtgt cacaagcggc atatgtgtgg ataccgcgtt
1751 cgcaaagaga caatttgaca cctgatgtca tacagaactt tctagcgtac
1801 gtgcctccat cacatgctat agacaatcaa ttggcttctg gagttgaagt
1851 tgagaattgg gccatcgaag tctcaaaggc ttatggagtc accattcaag
1901 agttttatag aacgatccta cctgcttgga ttgttaattg tattgtgaat
1951 gggactagcg atgagaggaa gaatgagaaa tcgtggagag ctgttgagct
2001 aaatgcacag ggtgaggata ttgatgattc agaataccct atggaaccaa
2051 tgtataaatt tgctctcccg acaatgagga aaataatgag aaatttttcc
2101 agccaagcaa ttttaatgta tcagaatagt gtgactgctg gaaaagcttt
2151 tgtaataaaa gcagctcgaa atgccgggta cacaagtatt gagaataagt
2201 ggctaggtat tgacttccta gccgaagcac aattgtcaca aagccaactg
2251 gatatcaaac atcaaatatt ggctgctaat gttggtagaa gtaaaactaa
2301 gttgtttgct ttagctgctc ctagtgacga taacaatgtg gataaagaaa
2351 ggcacactac gcgggatgtt agtgcaacta ggcatagcta tgcaggtgct
2401 gctattgaat aaattaattt aaaagtcaag tttggtggag ttttaggtga
2451 cttgttatat tctggttgtg aagccaagat atattcagga gccctttctc
2501 catatccttt tatttagtgt ggaaacacaa tatataaaag tac