Sequence of DPV Tomato leaf curl Taiwan virus
Tomato leaf curl Taiwan virus isolate LS5 segment DNA-A, complete sequence.
ACC No: GU723716
Dated: 2010-04-01 | Length: 2740 | CRC: -1312674625
ID GU723716; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
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AC GU723716;
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DT 01-APR-2010 (Rel. 104, Created)
DT 01-APR-2010 (Rel. 104, Last updated, Version 1)
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DE Tomato leaf curl Taiwan virus isolate LS5 segment DNA-A, complete sequence.
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KW .
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OS Tomato leaf curl Taiwan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2740
RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.;
RT "Molecular diversity and pathogenicity of tomato-infecting begomoviruses in
RT Taiwan";
RL Unpublished.
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RN [2]
RP 1-2740
RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.;
RT ;
RL Submitted (08-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, AVRDC-The World Vegetable Center, PO Box 42, Shanhua,
RL Tainan, Taiwan 74199, ROC
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FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Tomato leaf curl Taiwan virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /isolate="LS5"
FT /mol_type="genomic DNA"
FT /country="Taiwan:Wujei, Iland"
FT /collection_date="2007"
FT /db_xref="taxon:196093"
FT CDS 132. .473
FT /codon_start=1
FT /product="V2 protein"
FT /protein_id="ADE09077.1"
FT /translation="MWDPLLNDFPESVHGLRCMLAIKYLHLVENTYSPDTLGYDLIRDL
FT ILVIRARDYVEATRRYSHFHSRFQGSSPSELRQPVWQPCSCPHCPRHKQKEFMGESALV
FT QKAQDVQDV"
FT CDS 292. .1065
FT /codon_start=1
FT /product="V1 protein"
FT /note="coat protein"
FT /protein_id="ADE09074.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFASPYGNRVAAPTVLVTNKKSSW
FT VNRPLFRKPKMYRMYKSPDVPRGCEGPCKVQSFEQRHDISHVGKVLCVSDVTRGNGLTH
FT RVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQIFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYACKEQALVRKFMKINNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT CDS complement(1062. .1466)
FT /codon_start=1
FT /product="C3 protein"
FT /protein_id="ADE09076.1"
FT /translation="MDSRTGELITAAQAENGVYTWTINNPLYFKITQHNQRPFLRNHDV
FT TTIQVQFNYNLRKALGIHQCFIICQIWTRLQPRTSHFLRVFKYQCMKYLDNLGVISLNN
FT VFRAMRHVLYNVIEGTIDAQFSHIIKFKIY"
FT CDS complement(1207. .1614)
FT /codon_start=1
FT /product="C2 protein"
FT /protein_id="ADE09075.1"
FT /translation="MRNSSPSPSHSTHVPIKVQHKIAKKRPIRRRRVDLPCGCSYYLGI
FT NCASHGFSHRGTHHCSSSREWRVYLDNQQSPLFQNNTTQPETISTKPRRNDNTSSIQLQ
FT PEESVGNTPVFYNLPDLDSFTTSDLAFLEGI"
FT CDS complement(1514. .2602)
FT /codon_start=1
FT /product="C1 protein"
FT /note="replication-associated protein"
FT /protein_id="ADE09073.1"
FT /translation="MPPVNKFRINAKNYFLTYPHCSLTKEEALSQIQALQTPTNKLFIR
FT VCRELHEDGTPHLHILIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM
FT DKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKAEALNILREKAPKDFVLQFH
FT NLNNNLDRIFAPPLEVYISPFNFSSFDQVPRELVEWVAENVRDSAARPWRPMSIVVEGE
FT SRTGKTLWARSLGPHNYLCGHLDLSPRVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNFALKDWALKNAEFITLTEPL
FT YSRANQGPTQNSEEETNSQAEG"
FT CDS complement(2152. .2445)
FT /codon_start=1
FT /product="C4 protein"
FT /protein_id="ADE09078.1"
FT /translation="MGLLTCTFSSNSKENSNVKITDSSTSHPQPGQHISIRTFRELRAQ
FT QMSKPIWTKTETYLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY"
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SQ Sequence 2740 BP; 723 A; 535 C; 610 G; 872 T; 0 other;
gu723716 Length: 2740 01-APR-2010 Type: N Check: 824 ..
1 accggatggc cgcgattttt ttaagtgggt cctacgcact aatgttggtc
51 ggccaataga aacgctccct caaagcttat taacaaaaat acccgttata
101 aatacttggt ggctaagtta cagtcggtaa aatgtgggat ccacttttaa
151 atgattttcc ggagtctgta catggtctac ggtgtatgct tgccattaag
201 tatctacatc ttgtagaaaa tacatattcc ccggatactt tgggttacga
251 tcttatacgt gatttgattt tagttatccg agctagggat tatgtcgaag
301 cgacccgccg atatagtcat ttccactccc gcttccaagg ttcgtcgccg
351 tctgaacttc gccagcccgt atggcaaccg tgtagctgcc cccactgtcc
401 tcgtcacaaa caaaaagagt tcatgggtga atcggccctt gttcagaaag
451 cccaagatgt acaggatgta taaaagccca gatgttcctc gtggttgtga
501 aggcccatgt aaggtacagt catttgaaca gcgtcatgat atatcccatg
551 tgggcaaggt attatgtgtg tccgatgtca cacgtggtaa tgggctgacc
601 catcgtgttg ggaagaggtt ttgtgttaag tctatttatg tgttgggtaa
651 gatatggatg gatgagaata tcaagacgaa gaatcacaca aatactgtga
701 tgttcttctt agtccgtgat agaaggcctt atggtactcc acaagatttc
751 ggtcagatct ttaatatgta tgataatgag cctagcactg caacggtgaa
801 gaatgataat agagataggt ttcaagttct ccgtcgattc caggctacgg
851 tgactggcgg tcagtatgcg tgcaaagaac aagctctagt taggaagttt
901 atgaaaatca acaaccatgt tacttataat caccaagagg ctgctaaata
951 cgataaccat acagagaatg ctttgttgtt gtatatggca tgtactcatg
1001 ccagtaatcc tgtgtatgct actttgaaaa tcagaatcta tttctatgat
1051 tctgttcaaa attaataaat tttaaatttt attatatgtg aaaactgagc
1101 atcgattgtg ccctctatta cattgtatag tacatgtctc attgctctaa
1151 atacattgtt taaactaata acgcctaaat tgtctaaata cttcatacat
1201 tggtacttaa ataccctcaa gaaatgcgag gtccgaggtt gtaaacgagt
1251 ccaaatctgg caaattataa aacactggtg tattcccaac gctttcctca
1301 ggttgtagtt gaattgaact tgtattgtcg ttacgtcgtg gtttcgtaga
1351 aatggtctct ggttgtgttg tgttattttg aaatagaggg gattgttgat
1401 tgtccaggta tacacgccat tctctgcttg agctgcagtg atgagttccc
1451 ctgtgcgaga atccatgaga tgcgcagtta attccaagat aatacgagca
1501 cccacaagga agatcaaccc tccgcctgcg aattggtctc ttcttcgcta
1551 ttttgtgttg gaccttgatt ggcacgtgag tagagtggct cggtgagggt
1601 gatgaattcc gcattcttta aagcccagtc tttgagtgcg aaattctttt
1651 cttcgtctaa gtactcttta tatgatgatg ttggccctgg attgcaaagg
1701 aagattgttg ggataccacc tttaatttga attggtttcc cgtatttggt
1751 gttgctttgc cagtcccttt gggcccccat gaattcttta aaatgcttta
1801 gatagtgggg atcgacgtca tcaatgacgt tgtaccatgc ctcattgctg
1851 tagactcttg ggcttaggtc aagatgacca cacaagtaat tgtgtgggcc
1901 tagagacctg gcccaaagtg tcttccctgt acgactctct ccctctacaa
1951 caatactcat gggtctccat ggccgcgcag cggaatccct cacgttctcg
2001 gcaacccatt ctacaagttc tcttggaact tgatcaaatg aagaaaaatt
2051 aaaaggagaa atataaacct ccaatggagg tgcaaaaatc ctatctaaat
2101 tattatttaa attatgaaac tgtaaaacaa aatctttggg agctttctcc
2151 cttaatatat tgagggcctc agctttggac cctgaattga ttgcctcggc
2201 atatgcgtcg ttggcagatt ggcaacctcc tctagctgat cttccatcga
2251 cctggaaaat tccatgatca agtacgtctc cgtctttgtc catataggtt
2301 ttgacatctg ttgagctctt agctccctga atgttcggat ggaaatgtgc
2351 tgacctggtt ggggatgtga ggtcgaagaa tctgttattt ttacattgga
2401 attttccttc gaattggatg agaatgtgca ggtgaggagt cccatcttcg
2451 tgaagctctc tgcaaaccct aataaatagc ttatttgttg gtgtttgtag
2501 agcttgtatt tgggaaagtg cctcttcttt ggttagggag cagtgtggat
2551 atgtgaggaa gtagttcttt gcatttatcc tgaatttatt aactggaggc
2601 atgttgactt ggtcaatcgg tgtctctcaa acttctctat gtatcggtgt
2651 attggggtct tatttatatc tggacactaa atggcattta tgtaattaca
2701 taaaattacc aatgggtaaa gtggccatcc gtttaatatt