Sequence of DPV Rotavirus D
Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete sequence.
ACC No: GU733444
Dated: 2010-09-20 | Length: 2801 | CRC: -1848433564
ID GU733444; SV 1; linear; genomic RNA; STD; VRL; 2801 BP.
XX
AC GU733444;
XX
DT 20-SEP-2010 (Rel. 106, Created)
DT 20-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE Rotavirus D chicken/05V0049/DEU/2005 segment 2, complete sequence.
XX
KW .
XX
OS Rotavirus D chicken/05V0049/DEU/2005
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus.
XX
RN [1]
RP 1-2801
RX DOI; 10.1128/JVI.00332-10.
RX PUBMED; 20631147.
RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT "The genome segments of a group D rotavirus possess group A-like conserved
RT termini but encode group-specific proteins";
RL J. Virol. 84(19):10254-10265(2010).
XX
RN [2]
RP 1-2801
RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT ;
RL Submitted (09-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL Diederdorfer Weg 1, Berlin 12277, Germany
XX
CC GenBank Accession Numbers GU733443-GU733453 represent the complete
CC genome of Rotavirus D strain 05V0049.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2801
FT /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT /segment="2"
FT /host="chicken"
FT /strain="05V0049"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /collection_date="2005"
FT /db_xref="taxon:884200"
FT CDS 40. .2781
FT /codon_start=1
FT /product="VP2"
FT /db_xref="UniProtKB/TrEMBL:E2EBU0"
FT /protein_id="ADN06424.1"
FT /translation="MRKNKLIQDKEREKSKSKDETRTERGKTDRNTTNSLKNGVETDCN
FT DGNCVDNVNVDSKNDKKEERTKKDYIKSEKKSDGASDTKEKENGSKDKVVSNEENKKNE
FT KELAEILKTKEEVTKDLDKEIFYKYIPTFDVNIDIVKKMLDIPSVSPKDEKTLFRLFDL
FT KNLPLYDTSAVRTLETRWVWKLKKDDLPDDSYSVREYFQGLYEHILSIIPDYIMLRNMA
FT VDNTRSRYNGKIVDKESLDIVNKLFVDDQIDNQIRLYISDMNHTTIARTNTIIYPAIMN
FT PIDHEFNEYFLNAQLIEELNTGVIMNMIPRQLRADSNYNFALENSFNHTARYLPQLLMQ
FT DRIAIHEISSLWDSMTTANYVLARSVIPDLKDLLPADVQITEMAANLNLEALTTQVETA
FT YLSGITTESANECFKIIIASLLSTRTISMSYSGNNYVSLFSGMYLLSIIPFNSMLRESV
FT ISLQLAIVNSILYPAFGLPQLTYTYLDQDTPFMIAQQTISNRRVREWLQHVNNFDFPRV
FT NRDGVFVYTVPDRIRYGNIVNLFSETVTELANQQFRTYTLEYQRAIKRAIQLFVRRVPQ
FT ILDLTRLMFYNYEVLLRMIVMSQQRMITLTTEKLDLTRVTSLLFLISNTVVFPDPQSLM
FT RYYSANRNFLNNYNERIDDTVARLYASNRLNLYRKKVLSIVTDFVRNLYIFEATKVPAD
FT QMYNLRDRLRRLPLENRRQRVFDIMMNNQDQIIHASDKIAHGVVLFRNERELINDEYEG
FT LTNVVRNIDGNALSIEEIRNRGDYQPLIDSLLQTNSVALKGVIPFNTTHNPFELIAKVD
FT VSIFAPVLKDRDINKLKPVKYAINSDSQSFYIVANNNWKPTSSTAVYKLQPRQFDFTQS
FT LFQLTSRLFFQVFKDPLTFLTIRTVDPIIAVASDNRRIILSV"
XX
SQ Sequence 2801 BP; 1043 A; 410 C; 501 G; 847 T; 0 other;
gu733444 Length: 2801 20-SEP-2010 Type: N Check: 764 ..
1 ggcatataaa ctgcgacact gataatcttt cttgttacga tgcgaaagaa
51 taaactaata caagataaag agagagaaaa atctaaatct aaagatgaaa
101 caagaaccga gcgaggaaag actgatagaa acactacaaa ttcgttaaaa
151 aatggagtag agacggattg taatgatggt aactgcgtgg acaatgttaa
201 tgtagatagt aaaaatgata aaaaagaaga gagaacgaaa aaagattaca
251 ttaaaagtga aaaaaagagt gacggtgcat ctgatactaa agagaaagaa
301 aatggatcta aggataaagt tgtatcaaat gaagagaata agaaaaatga
351 aaaggagcta gcggaaattc tgaaaacaaa agaagaagtt actaaagact
401 tagataaaga aatattttat aaatatatac cgacatttga tgttaatata
451 gatattgtta agaaaatgtt agatatacca tctgtttcgc caaaggatga
501 gaaaacatta tttagattat ttgatttaaa aaacctgcca ttgtatgata
551 cttcagcagt taggacacta gaaacgagat gggtgtggaa gcttaaaaaa
601 gatgatttgc cagatgattc ttactcagtg cgtgagtact ttcaaggttt
651 atatgaacac attctatcaa taataccaga ttatataatg ttgaggaata
701 tggctgtgga taatactaga tcgagatata atggaaaaat tgttgataaa
751 gaatcattag atatagttaa taaattattt gttgatgatc agatagataa
801 ccaaattagg ctttacattt cggacatgaa ccatactact atagcaagaa
851 caaatacaat tatatatccg gctattatga atccaataga tcacgagttt
901 aatgaatatt ttttgaatgc tcagctgatt gaagaattaa atactggagt
951 aattatgaat atgattccaa gacagctaag agccgattct aactacaatt
1001 ttgctttaga aaattcgttt aatcacactg ctagatattt acctcagttg
1051 ctaatgcagg ataggatagc aattcatgaa ataagttcac tatgggattc
1101 aatgacaacc gcaaattacg tattagctag atcggttatt ccagatttga
1151 aggatttatt accagctgat gttcaaatta ctgagatggc tgctaatcta
1201 aatttggaag cattaaccac acaagttgag acagcttatt tatcaggtat
1251 aacgactgaa tctgcaaatg aatgttttaa aataattata gcatcacttc
1301 tatctacacg tactatatca atgagttatt ccgggaataa ttatgtttca
1351 ttattctctg gaatgtattt actatcaatt ataccattta attcaatgct
1401 acgtgagtca gttatatctc tacagctagc aattgtaaat tcaattcttt
1451 atccagcgtt tggtctacca caacttacgt atacatacct agatcaagat
1501 actccattta tgatagctca acaaactatt agtaatagaa gagtacgaga
1551 atggctacag cacgttaata actttgattt tccaagagta aatagagacg
1601 gtgtatttgt atatactgtg ccagatagaa ttaggtatgg taatatagta
1651 aacttattct ctgaaacagt gacagaatta gcgaatcaac agtttaggac
1701 gtatacttta gagtatcaaa gagctatcaa aagagcaatt cagttatttg
1751 ttaggcgtgt tccacaaata ctagatctga cgagattgat gttttacaac
1801 tatgaagttc tattacgtat gatagtaatg tcacagcaac gaatgataac
1851 tttaactact gaaaaattag acttaactag agtaacatct ttgctattcc
1901 taatatctaa tacagttgtc tttccggatc ctcaatcttt aatgagatat
1951 tactcagcga ataggaattt tctgaataac tataatgagc gtattgatga
2001 tactgtcgct agattatatg cgtcaaatag attaaatttg tatcggaaga
2051 aagtattatc aattgttact gattttgtta ggaacttata tatttttgaa
2101 gcaaccaagg taccagcaga tcaaatgtat aatttacgag atagattaag
2151 acgtctaccg ttggaaaaca gaaggcagag agtctttgat attatgatga
2201 ataatcagga tcagataatt catgcatctg ataaaatagc acacggtgtt
2251 gtgttgttca gaaatgaacg agaattaatt aatgatgaat atgaaggatt
2301 gacaaacgta gttcgtaaca tagatggaaa cgcactatct attgaagaga
2351 tacgtaatcg tggagattat caaccactca tcgatagttt attacaaact
2401 aattcagttg ccctcaaggg agttatacca ttcaatacga cacataatcc
2451 gttcgaactg atagcaaagg tcgatgtgtc aatttttgca ccggtactta
2501 aggatagaga cattaataaa ttaaaaccag ttaaatacgc aataaactct
2551 gattcacagt cattttacat tgtcgcaaat aataattgga agccgacatc
2601 atcaactgca gtatataagt tacaaccacg acaatttgat tttacacagt
2651 ctctatttca gcttacgtca agactatttt tccaagtatt taaagatccg
2701 cttactttcc taactatacg aactgtggac ccgataattg cagtcgctag
2751 tgacaaccga aggattatct taagtgtgta ggccactgtg cctttgtgac
2801 c