Sequence of DPV Rotavirus D

Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence.

ACC No: GU733448

Dated: 2010-09-20 | Length: 1353 | CRC: -1039953285

                
ID   GU733448; SV 1; linear; genomic RNA; STD; VRL; 1353 BP.
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AC   GU733448;
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DT   20-SEP-2010 (Rel. 106, Created)
DT   20-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE   Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence.
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KW   .
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OS   Rotavirus D chicken/05V0049/DEU/2005
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus.
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RN   [1]
RP   1-1353
RX   DOI; 10.1128/JVI.00332-10.
RX   PUBMED; 20631147.
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   "The genome segments of a group D rotavirus possess group A-like conserved
RT   termini but encode group-specific proteins";
RL   J. Virol. 84(19):10254-10265(2010).
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RN   [2]
RP   1-1353
RA   Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT   ;
RL   Submitted (09-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL   Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL   Diederdorfer Weg 1, Berlin 12277, Germany
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CC   GenBank Accession Numbers GU733443-GU733453 represent the complete
CC   genome of Rotavirus D strain 05V0049.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1353
FT                   /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT                   /segment="6"
FT                   /host="chicken"
FT                   /strain="05V0049"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:884200"
FT   CDS             21. .1217
FT                   /codon_start=1
FT                   /product="VP6"
FT                   /db_xref="UniProtKB/TrEMBL:E2EBU4"
FT                   /protein_id="ADN06428.1"
FT                   /translation="MEALSSIALTVREAREKIINGTIYSNVSDVIQQFNQMVRVLNGST
FT                   FTTGGLATMPLREWTFDLPQLGTTLLNIDANYVESMTPTLDMLTEFVIAVCETELLVDN
FT                   NRNGAYPQSEALRLLSNNKYVFLNMDLGSKYISEWHYRLSARDPMFSNHVPYIFPYDMA
FT                   IAYDRVTAAYDNVSGTRFASLNNAIHFAAFDQDFVRGQPANARQFEYLYNLRTPVSNAT
FT                   IVIHPISDILSVPSMIRNQAATHYWPYNPYNIPTFRDDIRVEFQLAGQVIYVAANLGMH
FT                   TIPQFDAVNIILTMRRLPLLADLQNIFPAGNPSATHQAVISTKIEVLNATTETTVPSIN
FT                   EHLYALIVGTRGRYQMQAGPVFPPGMRWDDILNRYTPARQSNMHRLMTTASILDLVSM"
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SQ   Sequence 1353 BP; 433 A; 248 C; 277 G; 395 T; 0 other;

gu733448 Length: 1353  20-SEP-2010  Type: N  Check: 6187  ..

       1  ggttttaaat agtaatcaag atggaggcgc tgtcttcaat tgcgttgact
      51  gtcagagaag cacgagaaaa gatcataaat ggaacaatat attccaacgt
     101  atcagatgta atacaacaat tcaatcaaat ggttagagta ttgaatggat
     151  caacttttac tactggtgga ttggctacta tgccacttag agaatggact
     201  tttgatctgc cgcaattggg tacaacctta ctaaatatag atgctaatta
     251  tgtagaatcg atgacaccaa cacttgatat gttgactgag tttgtgattg
     301  ctgtatgtga aactgagttg ctagttgata acaatagaaa tggtgcatac
     351  ccacaatctg aagcactgag attactctct aacaataagt atgttttcct
     401  taatatggat ttaggatcta agtacatctc agaatggcat tatagattgt
     451  cagctaggga tccaatgttt tcaaaccatg taccatatat attcccatat
     501  gatatggcta tagcatatga tagagtaacg gctgcttacg ataatgtgtc
     551  aggaacacga tttgcatcac taaataatgc tatacatttc gctgcatttg
     601  atcaagactt tgttcgtgga cagccagcta atgcgaggca atttgaatac
     651  ctgtacaatt tgaggacgcc agtgtctaac gctactatag ttatacaccc
     701  aatatcagat attttgtcag taccaagtat gatcagaaac caagctgcca
     751  cacactattg gccatacaac ccatataata taccgacgtt tagagatgac
     801  attagagttg aattccaact tgcaggacaa gtaatatatg tagctgcgaa
     851  tctgggaatg catactattc cgcaattcga tgcagtaaat atcatcttga
     901  caatgaggag attgccgttg ctagctgatt tgcaaaatat attcccagct
     951  ggaaatccat cagcaacgca tcaagctgtg atttcaacta aaattgaagt
    1001  gctgaatgcg acaactgaga caactgtgcc atctattaat gaacatttgt
    1051  atgctttaat tgtaggaact agaggtagat atcagatgca ggctggacca
    1101  gtctttcctc ctggtatgcg ttgggatgat attctgaata ggtatacacc
    1151  agcgagacaa tctaatatgc accggttgat gacaactgct tccatacttg
    1201  atctagtttc catgtaggcg cggaagatgc cactcgagat aacatcaagg
    1251  ttaaaatacg tggaactagg ctgagtatgt ggcacagtaa tgcggagtaa
    1301  tatctgcatg gaagaaatct gttatcatac gtcagcagct attatctttg
    1351  acc