Sequence of DPV Rotavirus D
Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence.
ACC No: GU733448
Dated: 2010-09-20 | Length: 1353 | CRC: -1039953285
ID GU733448; SV 1; linear; genomic RNA; STD; VRL; 1353 BP.
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AC GU733448;
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DT 20-SEP-2010 (Rel. 106, Created)
DT 20-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence.
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KW .
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OS Rotavirus D chicken/05V0049/DEU/2005
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus.
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RN [1]
RP 1-1353
RX DOI; 10.1128/JVI.00332-10.
RX PUBMED; 20631147.
RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT "The genome segments of a group D rotavirus possess group A-like conserved
RT termini but encode group-specific proteins";
RL J. Virol. 84(19):10254-10265(2010).
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RN [2]
RP 1-1353
RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.;
RT ;
RL Submitted (09-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment,
RL Diederdorfer Weg 1, Berlin 12277, Germany
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CC GenBank Accession Numbers GU733443-GU733453 represent the complete
CC genome of Rotavirus D strain 05V0049.
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FH Key Location/Qualifiers
FH
FT source 1. .1353
FT /organism="Rotavirus D chicken/05V0049/DEU/2005"
FT /segment="6"
FT /host="chicken"
FT /strain="05V0049"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /collection_date="2005"
FT /db_xref="taxon:884200"
FT CDS 21. .1217
FT /codon_start=1
FT /product="VP6"
FT /db_xref="UniProtKB/TrEMBL:E2EBU4"
FT /protein_id="ADN06428.1"
FT /translation="MEALSSIALTVREAREKIINGTIYSNVSDVIQQFNQMVRVLNGST
FT FTTGGLATMPLREWTFDLPQLGTTLLNIDANYVESMTPTLDMLTEFVIAVCETELLVDN
FT NRNGAYPQSEALRLLSNNKYVFLNMDLGSKYISEWHYRLSARDPMFSNHVPYIFPYDMA
FT IAYDRVTAAYDNVSGTRFASLNNAIHFAAFDQDFVRGQPANARQFEYLYNLRTPVSNAT
FT IVIHPISDILSVPSMIRNQAATHYWPYNPYNIPTFRDDIRVEFQLAGQVIYVAANLGMH
FT TIPQFDAVNIILTMRRLPLLADLQNIFPAGNPSATHQAVISTKIEVLNATTETTVPSIN
FT EHLYALIVGTRGRYQMQAGPVFPPGMRWDDILNRYTPARQSNMHRLMTTASILDLVSM"
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SQ Sequence 1353 BP; 433 A; 248 C; 277 G; 395 T; 0 other;
gu733448 Length: 1353 20-SEP-2010 Type: N Check: 6187 ..
1 ggttttaaat agtaatcaag atggaggcgc tgtcttcaat tgcgttgact
51 gtcagagaag cacgagaaaa gatcataaat ggaacaatat attccaacgt
101 atcagatgta atacaacaat tcaatcaaat ggttagagta ttgaatggat
151 caacttttac tactggtgga ttggctacta tgccacttag agaatggact
201 tttgatctgc cgcaattggg tacaacctta ctaaatatag atgctaatta
251 tgtagaatcg atgacaccaa cacttgatat gttgactgag tttgtgattg
301 ctgtatgtga aactgagttg ctagttgata acaatagaaa tggtgcatac
351 ccacaatctg aagcactgag attactctct aacaataagt atgttttcct
401 taatatggat ttaggatcta agtacatctc agaatggcat tatagattgt
451 cagctaggga tccaatgttt tcaaaccatg taccatatat attcccatat
501 gatatggcta tagcatatga tagagtaacg gctgcttacg ataatgtgtc
551 aggaacacga tttgcatcac taaataatgc tatacatttc gctgcatttg
601 atcaagactt tgttcgtgga cagccagcta atgcgaggca atttgaatac
651 ctgtacaatt tgaggacgcc agtgtctaac gctactatag ttatacaccc
701 aatatcagat attttgtcag taccaagtat gatcagaaac caagctgcca
751 cacactattg gccatacaac ccatataata taccgacgtt tagagatgac
801 attagagttg aattccaact tgcaggacaa gtaatatatg tagctgcgaa
851 tctgggaatg catactattc cgcaattcga tgcagtaaat atcatcttga
901 caatgaggag attgccgttg ctagctgatt tgcaaaatat attcccagct
951 ggaaatccat cagcaacgca tcaagctgtg atttcaacta aaattgaagt
1001 gctgaatgcg acaactgaga caactgtgcc atctattaat gaacatttgt
1051 atgctttaat tgtaggaact agaggtagat atcagatgca ggctggacca
1101 gtctttcctc ctggtatgcg ttgggatgat attctgaata ggtatacacc
1151 agcgagacaa tctaatatgc accggttgat gacaactgct tccatacttg
1201 atctagtttc catgtaggcg cggaagatgc cactcgagat aacatcaagg
1251 ttaaaatacg tggaactagg ctgagtatgt ggcacagtaa tgcggagtaa
1301 tatctgcatg gaagaaatct gttatcatac gtcagcagct attatctttg
1351 acc