Sequence of DPV Rotavirus D
Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence.
ACC No: GU733448
Dated: 2010-09-20 | Length: 1353 | CRC: -1039953285
ID GU733448; SV 1; linear; genomic RNA; STD; VRL; 1353 BP. XX AC GU733448; XX DT 20-SEP-2010 (Rel. 106, Created) DT 20-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Rotavirus D chicken/05V0049/DEU/2005 segment 6, complete sequence. XX KW . XX OS Rotavirus D chicken/05V0049/DEU/2005 OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus. XX RN [1] RP 1-1353 RX DOI; 10.1128/JVI.00332-10. RX PUBMED; 20631147. RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT "The genome segments of a group D rotavirus possess group A-like conserved RT termini but encode group-specific proteins"; RL J. Virol. 84(19):10254-10265(2010). XX RN [2] RP 1-1353 RA Trojnar E., Otto P., Roth B., Reetz J., Johne R.; RT ; RL Submitted (09-FEB-2010) to the EMBL/GenBank/DDBJ databases. RL Food Hygiene and Safety Concepts, Federal Institute for Risk Assessment, RL Diederdorfer Weg 1, Berlin 12277, Germany XX CC GenBank Accession Numbers GU733443-GU733453 represent the complete CC genome of Rotavirus D strain 05V0049. XX FH Key Location/Qualifiers FH FT source 1. .1353 FT /organism="Rotavirus D chicken/05V0049/DEU/2005" FT /segment="6" FT /host="chicken" FT /strain="05V0049" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2005" FT /db_xref="taxon:884200" FT CDS 21. .1217 FT /codon_start=1 FT /product="VP6" FT /db_xref="UniProtKB/TrEMBL:E2EBU4" FT /protein_id="ADN06428.1" FT /translation="MEALSSIALTVREAREKIINGTIYSNVSDVIQQFNQMVRVLNGST FT FTTGGLATMPLREWTFDLPQLGTTLLNIDANYVESMTPTLDMLTEFVIAVCETELLVDN FT NRNGAYPQSEALRLLSNNKYVFLNMDLGSKYISEWHYRLSARDPMFSNHVPYIFPYDMA FT IAYDRVTAAYDNVSGTRFASLNNAIHFAAFDQDFVRGQPANARQFEYLYNLRTPVSNAT FT IVIHPISDILSVPSMIRNQAATHYWPYNPYNIPTFRDDIRVEFQLAGQVIYVAANLGMH FT TIPQFDAVNIILTMRRLPLLADLQNIFPAGNPSATHQAVISTKIEVLNATTETTVPSIN FT EHLYALIVGTRGRYQMQAGPVFPPGMRWDDILNRYTPARQSNMHRLMTTASILDLVSM" XX SQ Sequence 1353 BP; 433 A; 248 C; 277 G; 395 T; 0 other; gu733448 Length: 1353 20-SEP-2010 Type: N Check: 6187 .. 1 ggttttaaat agtaatcaag atggaggcgc tgtcttcaat tgcgttgact 51 gtcagagaag cacgagaaaa gatcataaat ggaacaatat attccaacgt 101 atcagatgta atacaacaat tcaatcaaat ggttagagta ttgaatggat 151 caacttttac tactggtgga ttggctacta tgccacttag agaatggact 201 tttgatctgc cgcaattggg tacaacctta ctaaatatag atgctaatta 251 tgtagaatcg atgacaccaa cacttgatat gttgactgag tttgtgattg 301 ctgtatgtga aactgagttg ctagttgata acaatagaaa tggtgcatac 351 ccacaatctg aagcactgag attactctct aacaataagt atgttttcct 401 taatatggat ttaggatcta agtacatctc agaatggcat tatagattgt 451 cagctaggga tccaatgttt tcaaaccatg taccatatat attcccatat 501 gatatggcta tagcatatga tagagtaacg gctgcttacg ataatgtgtc 551 aggaacacga tttgcatcac taaataatgc tatacatttc gctgcatttg 601 atcaagactt tgttcgtgga cagccagcta atgcgaggca atttgaatac 651 ctgtacaatt tgaggacgcc agtgtctaac gctactatag ttatacaccc 701 aatatcagat attttgtcag taccaagtat gatcagaaac caagctgcca 751 cacactattg gccatacaac ccatataata taccgacgtt tagagatgac 801 attagagttg aattccaact tgcaggacaa gtaatatatg tagctgcgaa 851 tctgggaatg catactattc cgcaattcga tgcagtaaat atcatcttga 901 caatgaggag attgccgttg ctagctgatt tgcaaaatat attcccagct 951 ggaaatccat cagcaacgca tcaagctgtg atttcaacta aaattgaagt 1001 gctgaatgcg acaactgaga caactgtgcc atctattaat gaacatttgt 1051 atgctttaat tgtaggaact agaggtagat atcagatgca ggctggacca 1101 gtctttcctc ctggtatgcg ttgggatgat attctgaata ggtatacacc 1151 agcgagacaa tctaatatgc accggttgat gacaactgct tccatacttg 1201 atctagtttc catgtaggcg cggaagatgc cactcgagat aacatcaagg 1251 ttaaaatacg tggaactagg ctgagtatgt ggcacagtaa tgcggagtaa 1301 tatctgcatg gaagaaatct gttatcatac gtcagcagct attatctttg 1351 acc