Sequence of DPV Barbel circovirus

Barbel circovirus, complete genome.

ACC No: GU799606

Dated: 2011-04-14 | Length: 1957 | CRC: -365410434

                
ID   GU799606; SV 1; circular; genomic DNA; STD; VRL; 1957 BP.
XX
AC   GU799606;
XX
DT   14-APR-2011 (Rel. 108, Created)
DT   14-APR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Barbel circovirus, complete genome.
XX
KW   .
XX
OS   Barbel circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus; unclassified Circovirus.
XX
RN   [1]
RP   1-1957
RA   Lorincz M., Csagola A., Farkas S., Szekely C., Tuboly T.;
RT   "Identification of a circovirus of fish";
RL   Unpublished.
XX
RN   [2]
RP   1-1957
RA   Lorincz M., Csagola A., Farkas S., Szekely C., Tuboly T.;
RT   ;
RL   Submitted (16-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL   Microbiology and Infectious Diseases, Szent Istvan University Faculty of
RL   Veterinary Science, Hungaria krt. 23-25., Budapest H-1143, Hungary
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1957
FT                   /organism="Barbel circovirus"
FT                   /host="Barbus barbus (barbel)"
FT                   /mol_type="genomic DNA"
FT                   /country="Hungary"
FT                   /collection_date="02-Jul-2008"
FT                   /db_xref="taxon:759938"
FT   CDS             48. .1007
FT                   /codon_start=1
FT                   /product="putative replication protein"
FT                   /protein_id="ADG27890.1"
FT                   /translation="MPKATSKTRHLQNPRQDAPRREQPVKRWCFTLNNPTAEERRHIQE
FT                   IITADAVDFAVIGNEVGDSGTPHLQGFLNMKTKRRLGTMKKWFNARAHYEAAKGTDLQN
FT                   DEYCTKGGDTYLRIGEPGKERCRNDLQKAIDVVKRSSGSMRAVAEACPATFIRYGRGLR
FT                   DYANVMQYRKPRDFKTEVNVYVGDPGCGKSRKASELCAGTTVYYKPRGMWWDGYDGQEN
FT                   VIVDDFYGWMPCDELLRVFDRYPCKVPVKGAYVEFVSTNIYVTSNKHVWQWYKFEGFDP
FT                   AAVMRRVNVYLVYDNAGERFVNLRESAMYDPVTMRYCY"
FT   CDS             complement(1261. .1761)
FT                   /codon_start=1
FT                   /product="putative capsid protein"
FT                   /protein_id="ADG27891.1"
FT                   /translation="MTWNATSGLSSGIVFLLSDVSYPKNYWDYYKISKVVVQLWPEFNN
FT                   VPINADRDKVLYGSTAVDYDDATMATSTADPFKDYSSRKMFISNRTHIRIFTPRPNIEI
FT                   YKSSASTNYGFLNIRSGAWINTVHDGVPHYGLKIWLPSNTGAPSAIGYKLIIKYYVLFR
FT                   NRI"
XX
SQ   Sequence 1957 BP; 534 A; 416 C; 511 G; 496 T; 0 other;

gu799606 Length: 1957  14-APR-2011  Type: N  Check: 339  ..

       1  accagtcact gcggcaccaa gcaccactgc agatactaac cgaaatcatg
      51  cctaaggcca cgtctaagac gcgacatttg cagaacccgc gacaagatgc
     101  tccgcggcgc gaacaacctg tgaaaagatg gtgtttcacc ctgaacaacc
     151  ctacggctga ggagcgtcgc catattcaag agataataac ggcggacgcc
     201  gtagactttg ccgtgatcgg caatgaagta ggtgacagtg ggacaccgca
     251  tcttcaagga tttctgaata tgaaaacaaa acgtcggctg ggaactatga
     301  aaaagtggtt taacgctaga gctcactacg aggccgctaa aggcacggat
     351  ctacaaaacg acgaatactg cacaaagggc ggcgatactt accttcgcat
     401  cggtgaaccg ggcaaagaac gctgcagaaa cgatcttcaa aaggcgatag
     451  acgttgtgaa gagatcctcc gggagtatgc gggcagttgc cgaggcttgt
     501  cccgctactt ttattcgtta tgggcggggt ctacgtgatt acgccaacgt
     551  gatgcagtac cggaagccac gtgatttcaa aacggaagtg aatgtttacg
     601  tcggagaccc cggatgtgga aagagccgga aggcgtcgga gctttgtgca
     651  ggcaccactg tgtactataa gcctcgcggt atgtggtggg atggatacga
     701  tggacaagag aatgtaattg tcgatgactt ttacggctgg atgccatgtg
     751  atgaactgtt gagagtgttt gatcgatatc cttgtaaagt accggtaaaa
     801  ggagcctatg tggaatttgt gtcaactaat atatatgtga cgtctaacaa
     851  gcatgtgtgg caatggtata agtttgaagg gtttgacccc gccgccgtca
     901  tgagacgggt taatgtgtat cttgtgtacg acaatgccgg ggagagattt
     951  gtcaatctcc gtgaatcggc tatgtatgac cctgttacca tgagatattg
    1001  ttattgaata aacaaacgat gaagaagtac taaaatgcct tttatttttg
    1051  ttgacaatat taaaaagaac cgatcatttt tgtacatttt ttttgtttta
    1101  catgcttaac aaacaaacat aaagtaagga ggtgtctccg ttagaagttt
    1151  ctccgttaga attgcactga agtcaagtac agaatccttc agtgcgcgga
    1201  gcgccggtgg agggccggag gcccgacacc tctggtacgg cgtagccgta
    1251  gcctacgccg ttaaatccgg tttctgaata agacgtagta tttgataatt
    1301  agtttgtacc cgattgcaga aggggccccg gtgtttgaag gtaaccatat
    1351  tttgagcccg taatgaggta cgccgtcgtg tactgtgtta atccatgcac
    1401  cggatcgaat attcagaaat ccgtagttgg tagaggcgga agacttgtaa
    1451  atttcaatat tgggacgagg agtaaagatc ctaatatgtg tcctgttcga
    1501  aataaacatt tttctagagg agtagtcctt aaacggatct gcagtgctag
    1551  tagccatggt agcgtcgtcg taatcgacag ctgtgctacc gtaaaggacc
    1601  ttatctctgt cagcgttaat tggaacgttg ttgaattcag gccacagttg
    1651  cacgacaact ttactgatct tataatagtc ccagtagttc tttggatacg
    1701  acacatcaga caataagaaa acaattcccg aagagagccc gctggtagca
    1751  ttccaggtca aatgatcgtg tttgatagct cgtaaacgga agtaggagta
    1801  tcgtcctgtg tgtcgccttc ttctgacgta cttccgtcgc cgccatccac
    1851  gtgagctccg acgccttccg gctcgtcgtc tggcacgcct tctggggagg
    1901  agaaatcaat tagtgacgcg tatataaccg gaagtgccgc agtgactgcc
    1951  tagtatt