Sequence of DPV Satsuma dwarf virus
Satsuma dwarf virus isolate FJ segment RNA2, complete sequence.
ACC No: GU901210
Dated: 2010-04-21 | Length: 5349 | CRC: -946918590
ID GU901210; SV 1; linear; genomic RNA; STD; VRL; 5349 BP.
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AC GU901210;
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DT 21-APR-2010 (Rel. 104, Created)
DT 21-APR-2010 (Rel. 104, Last updated, Version 1)
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DE Satsuma dwarf virus isolate FJ segment RNA2, complete sequence.
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KW .
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OS Satsuma dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Sadwavirus.
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RN [1]
RP 1-5349
RA Sun X., Wu G., Li Y.;
RT "The complete sequence of Satsuma dwarf virus from China";
RL Unpublished.
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RN [2]
RP 1-5349
RA Sun X., Wu G., Li Y.;
RT ;
RL Submitted (20-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Lab of Plant Virology, College of Plant Protection, Southwest University,
RL No. 1, Tiansheng Road, Chongqing 400716, China
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FH Key Location/Qualifiers
FH
FT source 1. .5349
FT /organism="Satsuma dwarf virus"
FT /segment="RNA2"
FT /host="Citrus unshiu Marc. cv. Miyagawa"
FT /isolate="FJ"
FT /mol_type="genomic RNA"
FT /country="China:Chongqing, Fengjie"
FT /collection_date="20-May-2009"
FT /db_xref="taxon:47416"
FT CDS 307. .5031
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains movement protein and coat protein"
FT /protein_id="ADE87962.1"
FT /translation="MEIYGFSPFSFQDTESWKNSAFAACRGCKTYPIEEVGTDGSVRIR
FT ELPVGLVLKGVMAQYRSILWTQFVADPATTTVDRKSFDFWLFCRRAEAAQERAFRARQS
FT KRAAKAAALDAEGLIDRSYKGRTYKVSVRGLSWKSVRAAQKAARKAAKNFGFTISENPF
FT SALPSEGRSAFSAGETPAPPACALPNICWAARRASTKSASPADVESLPFLGLLPESPRL
FT RNEGLLSLLRAKLADFKAARAPLVPTAKRVIKTPSEDSIWESVEKSAPIVGCVINGMVG
FT IPKNPIIQRLLPERKYIARKCVRAFVPQVMCSSRHKHDFAQLRNPDKWIIFPSVIRIST
FT VDAYATARRLGLINDCSSALERVKAFSSHHLDLEKEVSRLEREVRAAPRKTIVARVFKS
FT FFEEYALAHDEIVERLRAAKEDRRREHLTFLRNIKRQAHELELKERQSFLVAIEEARIK
FT SLELKAKIEEGPPPQILYTPEWHVVQRAKAYADATMSPSERDIAHLAYENKYVNARAYP
FT NTDVAARFRARCDAHFERIFGYAVHRGTRTETLTQVAESPPPIITAPVGQRVGGNPPTE
FT TPGAAAVRAAMRRAVERNRPGPGESSAMPAREPLLSHRGQYYARSLSDRYNNIFSRNNA
FT YNLMRETDVPIMEFTFGQQQDIAIPLSSRFGNHQSLHVGELEIAVQSSVLTGVDTAMAI
FT MVSDASHDRLEEGFLSLTILRLGAGWMRHTIPIGITVFPTDPLVDRLLRLSVLTGGSPM
FT ADGRQVARLHYGLLGQAYTGAGEQRLTLYATRRINVRQTHVTQFLEGNHIHIARSEDRQ
FT QPLPHMSLEFRPLSGSTRYVARPGGYQAIESGRQSVDITRNFIRMPTHLTRSATHREET
FT PAPDNPNEQNVGRSEINAEIPTNSAEEEERRRRTPHGSAIHRGYTEFSERNENLIEHLY
FT VPSMHGLSLKEDIHLFTKNLEIPSTADFCKELARYSVLTEAMSYRGASYYSRLLSGVAI
FT LRPHFKFTFRLVTPILESIPLFVVWDDLGQLNTKVSLLSSAFQVIDSDHTRAAVYEVRP
FT SGPTDLLTPSKANYGVGGDLVIFSGGYGSSSLSSPLRLKIEACLLKDTHLGSGEIALPQ
FT GPSSMLSFHYLNEVDLGDVNMHIFLGSCKYKSSSTVGGRKYISVCPAAGLVHKGGKAAY
FT LGLGASLFSLYNFWKGSYVLKVDVLSKGSCAGAISIYIPPPGSSADHYSQPQLDTLPRY
FT ELPWRGSGSARFEVENFSWIGWHLTKPQRYITNEDWFSLNAGLLVALNQLPTTRTGGSS
FT DIRVIFRIVKFKNLTLKERSTTCDIFAGIKDSEYTDPLVDVLDENITAPSASSLTTVQD
FT PDLGLETTSSAQTSGLTTTRSFGAYYAYLLGGESAGNRWHSYVLPITMGHHREMIGASK
FT TGYLNTQLDETIRIRYSLRNPLHILCSAGAYYAVDLLFTLVVDGDHGAERAYTQLGLIQ
FT TPLMEYFDGYSASRNLSSEGGYSNQLGVGKSYVQLIVPRRNYRARSITTNTGALFFETI
FT GSLTVKFAVSAKIKGVHLYVEPVGPIDVDGYGRGADISLTNENFVLMPSLRTAA"
XX
SQ Sequence 5349 BP; 1267 A; 1242 C; 1306 G; 1534 T; 0 other;
gu901210 Length: 5349 21-APR-2010 Type: N Check: 8193 ..
1 ttgattcaag cgaagtggaa gccccacaca aaaaccatct tgttgtactc
51 tctctctctc tcactgagtc acatttactt ttgatgatga cttcttcttc
101 actttttctt tcgatgttcg ggatagcgcc cgttcaccac tgatactagg
151 gatagcgccc tagtttcgat tgctgggata gcgcccagtt tcttttgtta
201 atatttcgat attttcattt tgtaatttcg attacttttc ttttatatta
251 aattaaaacc aaaaagattt tcccatttct ttgatttctt ttttgtttat
301 ttctttatgg agatctacgg attctccccc ttctccttcc aggacaccga
351 gtcctggaag aactctgctt tcgcagcctg ccgcggctgc aagacctacc
401 ccatcgagga ggtaggtact gacggatccg tgaggatccg ggagctcccg
451 gtggggctcg tactaaaggg cgtcatggcc caatatcggt ccattttatg
501 gacccaattt gtggcggatc ccgccactac caccgtggac cggaagtcct
551 ttgacttctg gctcttttgc cgccgtgctg aggcggccca ggaacgagcc
601 tttagggctc gccaatccaa gcgagccgcc aaggccgctg ccctcgatgc
651 tgagggctta attgatcgct cctacaaggg gcgaacctac aaggtctctg
701 tgcggggcct ttcgtggaaa tctgtgcggg ctgcacagaa ggctgccagg
751 aaggcagcca aaaattttgg attcaccatt tcggagaatc ccttctcggc
801 actcccatct gaagggagat ctgccttttc tgcgggtgaa actcccgctc
851 ctcctgcctg cgcgctcccc aatatttgtt gggcggctcg cagggcttcc
901 acgaagtccg cctctcctgc ggacgtagag agtttgccct ttttgggctt
951 actcccggag tctccccgcc tccgaaatga ggggttgctc tctttattga
1001 gagccaagtt ggccgacttc aaggctgcgc gggcaccgct agtgcccaca
1051 gctaagaggg tcatcaagac cccttccgaa gactccatct gggagtctgt
1101 ggagaagagc gccccgattg tcgggtgcgt tataaatggt atggttggga
1151 ttcccaaaaa cccaatcatt cagcgtcttc tccctgagcg caaatatatt
1201 gcgcgcaaat gcgtccgggc ttttgttcct caagtgatgt gttcgtcaag
1251 acacaaacat gattttgccc agttgcggaa tcctgataag tggattattt
1301 tcccatctgt gattaggatt tccactgtgg acgcttacgc cacagccagg
1351 cgccttgggc ttataaatga ctgttcttcg gctctcgagc gagtcaaggc
1401 attttcctct caccatctag acttagagaa ggaagtgtct cgcctcgaac
1451 gagaagttcg cgcagccccg cggaaaacga tagtagctag ggtgttcaaa
1501 tccttctttg aagaatatgc tctagcacac gatgaaatcg tggaaaggct
1551 tagggctgct aaagaggata ggcgcaggga acatttgact ttcctgcgca
1601 atatcaagcg ccaggctcac gagcttgaat tgaaggaacg ccaatctttt
1651 ttggtggcta ttgaagaagc tcgtattaag tcccttgagc tcaaggctaa
1701 aattgaagag ggtcctcccc ctcaaatttt atatacccca gagtggcatg
1751 ttgttcagcg agcaaaagct tatgctgatg ctacaatgtc gcccagcgaa
1801 agggatatag cgcatttggc ttatgaaaat aagtacgtca atgctcgtgc
1851 gtatccaaat acggatgtcg ctgcgagatt tagagcacgt tgtgatgcgc
1901 attttgaaag gattttcgga tatgctgtgc accgaggcac aagaaccgaa
1951 acgttgactc aggttgctga gtctcctccg ccaattatca ctgcgcctgt
2001 tgggcaaagg gttggaggaa atccgccaac agaaacaccg ggagctgctg
2051 ccgtgcgtgc tgcaatgcga cgtgcggtcg agcgcaatcg acctgggcct
2101 ggagagtcat cggctatgcc agctcgggag cccctcttgt ctcatagagg
2151 gcaatattat gcacgctccc tttcggatag atataacaat atcttctcgc
2201 gcaacaatgc ctataattta atgcgcgaga ctgacgtgcc cattatggag
2251 tttacgtttg ggcagcagca agatattgct attcctctat cctcccgatt
2301 cggaaatcat caatctttac acgttggtga actggaaatt gccgtacaat
2351 cctcggtttt gaccggagtt gatacggcga tggctataat ggtttccgac
2401 gcctcccatg atcgtcttga agagggattc ttaagtctca ctattttaag
2451 attgggagcc gggtggatgc gccacactat ccccatagga attacagttt
2501 tcccaactga cccattagtc gatagacttt tgcgattatc agttttgact
2551 ggtgggtcac ctatggcgga tggtaggcaa gtggccagat tacattatgg
2601 attacttggc caagcctata caggcgctgg cgagcagcga ttaacgctgt
2651 atgccaccag aaggataaat gtgcgtcaaa cgcacgttac tcagtttctg
2701 gagggcaatc atatccatat tgctcgctcc gaggatagac aacagccact
2751 ccctcatatg agtttggagt ttaggcctct atccggaagc accaggtatg
2801 ttgcacgacc tggaggatat caagctattg aaagtggcag gcagagtgtg
2851 gatatcacgc gaaattttat tcgcatgcct acgcacttaa cgcgaagtgc
2901 aacgcatcgg gaggaaactc ccgcacccga caatccaaat gagcagaatg
2951 ttggcagaag cgagatcaac gctgaaatcc cgacaaattc tgccgaggag
3001 gaagaaaggc gtcggaggac gcctcatgga tctgctattc atcggggtta
3051 tacagagttc tccgagcgga acgaaaatct tattgaacat ctttacgttc
3101 cgtctatgca tggtctatct ctcaaggaag atatacatct tttcactaag
3151 aaccttgaga taccgagtac tgccgatttc tgtaaggaat tggcaagata
3201 ctcggtttta acagaggcta tgagttatag gggtgcaagt tactattcac
3251 ggctcttgtc cggggttgct atattgcgtc cccattttaa gtttactttt
3301 agacttgtga cccctatcct tgaatccata cccctttttg ttgtctggga
3351 tgatttgggc caattaaaca ctaaggtctc cttattatct tctgcttttc
3401 aggtgatcga ttccgatcat acgagggcag cagtgtatga ggttagacct
3451 tctgggccaa ctgatctcct taccccttcg aaagccaact atggggttgg
3501 aggagattta gttatcttct cagggggtta tggttcctcc tccctctcct
3551 cacctttgcg cctcaaaatt gaagcgtgtc ttcttaaaga cacgcatctt
3601 ggttctggtg agattgctct accccaaggt ccatcttcca tgctctcatt
3651 tcattatttg aatgaggtgg atcttggtga tgtgaatatg cacatatttt
3701 taggtagttg taagtataaa tcctcttcta ccgttggtgg tagaaagtac
3751 atatctgtgt gtccagcagc gggtcttgta cataagggtg gaaaagctgc
3801 ttatttaggt ttaggagctt cccttttttc cctatataat ttttggaagg
3851 ggagctatgt tctcaaggtt gacgttctgt caaagggtag ttgcgctggt
3901 gcgatatcaa tttacattcc gccaccaggc tcaagcgctg atcactactc
3951 tcaaccgcaa ctggacactc ttcccaggta tgagttgccc tggagaggtt
4001 cgggatccgc cagattcgaa gtcgaaaatt tttcttggat tggttggcat
4051 ctgacaaaac cgcagcgata tataaccaat gaagactggt tttcgctgaa
4101 tgctggtttg ttggttgctc tcaatcaact acctacaact agaactggcg
4151 gttctagtga tataagagtg atattccgaa ttgttaaatt taaaaatctc
4201 actcttaaag aacgttcaac aacctgcgat atatttgcag gtattaaaga
4251 ctcggagtat acagatcctc tagtggacgt gctagatgaa aacatcacgg
4301 caccatccgc ttcttcattg acgacggtcc aagatccaga ccttggactg
4351 gaaactactt cgagcgccca gacttctgga ctgaccacca cgcgtagttt
4401 tggagcgtat tacgcttatc ttcttggtgg cgaaagtgct ggaaataggt
4451 ggcactctta tgtgttgcct attactatgg gacaccacag ggagatgata
4501 ggagcatcta agactgggta tttaaatact cagcttgatg agaccatacg
4551 gattcgctat tctttgcgga atccgttaca tattttgtgc tcagctggag
4601 cgtattatgc ggttgacctc ctatttactc ttgttgtgga cggtgatcat
4651 ggagccgaac gtgcctacac tcaactgggt ttaattcaaa cgccactcat
4701 ggaatatttt gatggatatt ctgcgagtag aaatctctct tcagaagggg
4751 ggtattcgaa ccaattgggt gtgggaaaat cttacgttca gttgattgtc
4801 ccacgaagga actacagagc tagatctatc acgactaata ctggtgcgct
4851 cttctttgaa accattggat cgctgacggt taaattcgct gttagcgcta
4901 agatcaaggg agtacatctg tacgttgagc ctgtaggacc tatcgatgtt
4951 gatgggtatg ggcggggagc ggacatatct ctaactaatg agaattttgt
5001 cctgatgccc tcgctgcgta cagctgctta attgcggcat ttggtgttcc
5051 cagtcggacc tttaacactg gggtttgaga acggaaagaa attttctagg
5101 gatttctttc aatttaagtg atgcccaccg gactttaacg tggggttatg
5151 gcttctctct gcggcctgat gcagagttgt acattaataa ctagtgtgtt
5201 tatttttgtg tgtttgtttt gtttgttttg acataaaata aactgagttt
5251 caaaaagggt ttctcgagtt cttccctttc cgactcagga gcttggcgtg
5301 tttttcttga tttctgtcgc cggtttcaat cagtgaaagt ctgatggcc