Sequence of DPV Narcissus late season yellows virus

Narcissus late season yellows virus isolate WA-9 polyprotein gene, partial cds.

ACC No: GU905157

Dated: 2010-07-23 | Length: 1160 | CRC: 762949322

                
ID   GU905157; SV 1; linear; genomic RNA; STD; VRL; 1160 BP.
XX
AC   GU905157;
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DT   13-JUL-2010 (Rel. 105, Created)
DT   23-JUL-2010 (Rel. 105, Last updated, Version 2)
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DE   Narcissus late season yellows virus isolate WA-9 polyprotein gene, partial
DE   cds.
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KW   .
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OS   Narcissus late season yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1160
RX   PUBMED; 20480194.
RA   Wylie S.J., Nouri S., Coutts B.A., Jones M.G.;
RT   "Narcissus late season yellows virus and Vallota speciosa virus found
RT   infecting domestic and wild populations of Narcissus species in Australia";
RL   Arch. Virol. 155(7):1171-1174(2010).
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RN   [2]
RP   1-1160
RA   Wylie S.J.;
RT   ;
RL   Submitted (22-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL   State Agricultural Biotechnology Centre, Murdoch University, South Street,
RL   Perth, WA 6150, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1160
FT                   /organism="Narcissus late season yellows virus"
FT                   /host="Clivia miniata"
FT                   /isolate="WA-9"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:160842"
FT   CDS             <1. .1071
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ADJ95796.1"
FT                   /translation="AAMIEAWGYDELTREIRKFYTWLLSQAPYSGLAQEGKAPYIAETA
FT                   LRKLYLNKNAEQSDIMRYVEAILEDFDDETPLEVYHQSGKQTLDAGVEEERSNPKGKEK
FT                   RATDESSGKPPSTNRDKDVNVGVSGNFPVPRLKMITRKLTLPLYNKRIALNLDHLITYT
FT                   PRQVDLSNTRATQRQFDTWYEGVMTDYDVDEAKMAIILNGFMVWCIENGTSPNINGVWV
FT                   MMDGDEQIEFPLKPVLEHAKPTLRQIMAHFSNGAEAYIEMRNYQQPYMPRYGLQRNLTD
FT                   MSLARFAFDFYEMTSKTPIRAREAHLQMKAAALRGTQNHLFGLDGSVGTTEENTERHTT
FT                   DDVNRNMHSLLGVRGV"
FT   mat_peptide     <1. .246
FT                   /product="NIb replicase"
FT   mat_peptide     247. .1068
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1072. .>1160
XX
SQ   Sequence 1160 BP; 387 A; 231 C; 275 G; 267 T; 0 other;

gu905157 Length: 1160  23-JUL-2010  Type: N  Check: 6453  ..

       1  gctgcaatga tcgaagcttg gggatatgac gagttgacac gtgaaatacg
      51  aaagttttac acttggcttc tatcccaagc accttatagt ggtttagcgc
     101  aagagggaaa agcaccatac attgctgaaa cggctctgag aaagttatat
     151  ttaaataaga acgctgagca gagtgatatt atgcgttatg tggaagcaat
     201  tttggaagat tttgacgatg aaacgccact tgaagtctat caccagtcag
     251  gcaagcaaac tctggacgcc ggtgttgagg aggagcgaag taaccctaag
     301  ggcaaagaga agagagcaac cgatgaatca agtgggaaac ccccatccac
     351  gaacagagat aaagatgtaa acgttggtgt cagtggcaac ttcccagtgc
     401  cacgactgaa aatgataaca cgtaagttga cactgccatt gtacaacaag
     451  cgcatagctc ttaatctaga ccatctcatc acatacacac cacgacaggt
     501  ggacttatca aacacaagag ccacacaaag gcaattcgat acatggtacg
     551  aaggggttat gacggattat gatgtcgatg aagcgaaaat ggcaattata
     601  cttaacggat ttatggtgtg gtgtatcgag aatggaacat caccaaacat
     651  caatggagtg tgggttatga tggatggtga tgaacaaatt gaatttcctc
     701  taaaaccagt ccttgaacac gccaaaccaa cactcaggca aataatggcc
     751  catttcagta acggtgctga agcgtatatt gagatgagaa actaccaaca
     801  gccgtacatg ccacggtacg gcctgcagcg aaatttaacc gacatgagcc
     851  tggcacgctt tgcttttgat ttctatgaga tgacttcaaa aacaccaatc
     901  cgagcacgag aagcacacct gcagatgaaa gcagcagctc ttcggggcac
     951  gcagaatcat ttatttggct tggatggaag tgttggtaca acagaagaga
    1001  acacggagag acacaccacc gacgatgtaa ataggaatat gcatagcctt
    1051  ctaggcgtaa ggggcgtgta atattgtgtg ttggtattta tagcaaaata
    1101  tataaatact cgttagtatt ctcaactata gagaaatatc atcacacaag
    1151  gatgctagtt