Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate CACSC3 segment RNA1 polyprotein gene, partial cds.
ACC No: GU972569
Dated: 2010-06-28 | Length: 2511 | CRC: 823723285
ID GU972569; SV 1; linear; genomic RNA; STD; VRL; 2511 BP.
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AC GU972569;
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DT 28-JUN-2010 (Rel. 105, Created)
DT 28-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE Grapevine fanleaf virus isolate CACSC3 segment RNA1 polyprotein gene,
DE partial cds.
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KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2511
RX PUBMED; 20540977.
RA Oliver J.E., Vigne E., Fuchs M.;
RT "Genetic Structure and Molecular Variability of Grapevine fanleaf virus
RT Populations";
RL Virus Res. 0:0-0(2010).
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RN [2]
RP 1-2511
RA Oliver J.E., Fuchs M.;
RT ;
RL Submitted (04-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West
RL North Street, Geneva, NY 14456, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2511
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA1"
FT /host="Vitis vinifera cultivar Cabernet Sauvignon"
FT /isolate="CACSC3"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="leaf"
FT /collection_date="16-Oct-2007"
FT /db_xref="taxon:12274"
FT CDS <1. .2483
FT /codon_start=3
FT /product="polyprotein"
FT /protein_id="ADJ10926.1"
FT /translation="IRGEVPYVPEDGLVSRGYRKVGYLHASDAPHVPSKTSFMKVPDEL
FT CFPYPDPKQPAILSAEDERLKGTIHEGYTPLRDGMKKFAEPMYLLEEKLLDEVAGDMVQ
FT TWYDPGEFLEDISLDQAINGDMDEEYFDPLVMDTSEGYPDVLDRKPGEKGKARFFVGEP
FT GNRAFVAGCNPEKAYYQLEEDSKTKIPSLVSIETPKDERLKRSKIDTPGTRLFSVLPLA
FT YNLLLRVKFLSFSRLLMKKRGHLPCQVGINPYSREWTDLYHRLGELSDVGYNCDYRAFD
FT GLITEQILSTIADMINAGYRDPVGNRQRKNLLLAICGRLSICGNQVYATEAGIPSGCAL
FT TVVLNSIFNELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDAL
FT KMQMAKLGVTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMLNAPLEKLSIMSSLV
FT YIRSDGSDMLQKPLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAE
FT SFHECQKSGESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATEN
FT EIVLSLSSVLPGDRNVFKLDLPCGDGIGRLPSKCSILNLRKPGLVMRLCKRAQDEKKTL
FT VIRDERPYIGAWAVACICGESFGFGQQSVLALYANLLGPNQRNGLASYFSDFESPIHIK
FT KVHAKTNSYEGGEALKEIFTFCETIFYEATEMDTRKVMLQNQPDVYPSISLVGGVCFPN
FT EGGEPGAMYSETDVTMARQVQGVYVSEACVKCCRRCVGVATRVVTNTQLFGNNLLKTHL
FT KALRKIQNHTCLRK"
FT mat_peptide <1. .8
FT /product="proteinase"
FT mat_peptide 9. .2480
FT /product="RNA-dependent RNA polymerase"
FT 3'UTR 2484. .>2511
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SQ Sequence 2511 BP; 708 A; 461 C; 622 G; 720 T; 0 other;
gu972569 Length: 2511 28-JUN-2010 Type: N Check: 7085 ..
1 ttattagggg agaagtgcca tatgtaccag aagatgggtt agtgtcgagg
51 ggatatagga aagtgggtta tttgcacgca tcggatgcgc cacatgtgcc
101 ttctaagact tccttcatga aggtaccaga tgaattgtgc tttccatatc
151 ctgatcctaa gcagcccgcc atccttagcg cagaggatga acgccttaag
201 ggaacgatcc atgaaggata cactccgtta agggatggca tgaagaagtt
251 tgctgagcca atgtatctgc tagaggaaaa actactcgat gaagttgcag
301 gtgacatggt tcagacgtgg tatgacccgg gtgaattcct tgaagatatt
351 tctttagatc aagctatcaa tggggacatg gatgaggaat atttcgaccc
401 cctagtgatg gacacgtctg aaggatatcc cgatgtttta gatcgtaaac
451 ctggggaaaa gggaaaggcg agattctttg ttggggaacc aggaaataga
501 gcctttgtag ctggttgtaa tcctgaaaag gcttattacc aactagaaga
551 ggactctaaa accaagatac cttccttggt tagtatagaa accccaaaag
601 acgagagatt aaaaagaagt aaaatcgata ctcctggtac gagattattt
651 tctgtgctgc ccttggcata taatctcttg ttgagagtaa aatttttgtc
701 tttttcccgc ctactgatga agaagagagg ccacctgcct tgtcaagtgg
751 gcatcaatcc ttatagtcgc gaatggaccg atttgtatca ccgcttaggt
801 gaactctctg atgtcggata caattgtgat tatagggctt ttgatggcct
851 aattacggag caaattttga gtacgatcgc cgatatgatc aatgctggat
901 atcgtgaccc tgtcggcaat aggcagagga aaaatttgct cctagcaata
951 tgtggacgcc tctctatctg tggaaatcaa gtgtatgcca ctgaagcagg
1001 cataccttca ggctgtgctc tcacagtagt actcaattcc atttttaatg
1051 aactactgat gagatattgc ttcaagaaaa tagttccccc tgtgtacaag
1101 gaatgttttg acagatgtgt cgtgctcatc acctatggtg atgataatgt
1151 cttcactgtg gcacaatctg tcatgcagta ttttactggc gatgctctga
1201 aaatgcaaat ggcaaagctt ggggtaacta ttactgatgg gaaagataag
1251 tctctttcca ctattccagc ccgtccactg ctggaattag aatttttgaa
1301 acgtggattt gttagaagct ctgggggtat gttaaatgcc cctttggaaa
1351 aattatcaat aatgagttct ttggtctaca tcagaagtga tggctcagac
1401 atgttgcaga aaccattgga caatgttaat actgcacttg tcgagcttta
1451 tctacatggt gatagaactt attttgaatc agtcagagct ttttacttcg
1501 agaaactccc tcccggcgct tataaggagt tgacaacgtg gtttcaagca
1551 gaatcatttc atgagtgtca gaagagtgga gagagtggtt ataagccaca
1601 agggctcatt gagattagtc atggagcagc ttttgccagt tttactcaac
1651 aagctggtac agagttggaa aagcatgaca tttgccctgg cttatcgatt
1701 gcaggaacta agtacattgc tactgagaat gagattgttt tgtctcttag
1751 ttccgtcctg cccggggata gaaatgtttt caagttggat ctgccttgtg
1801 gagacgggat agggcgtttg ccttccaaat gcagtatctt aaacttgaga
1851 aaaccgggct tggttatgag attgtgcaag cgtgcccaag atgaaaagaa
1901 gaccttagtt attcgtgacg aaaggccata cattggtgca tgggcagttg
1951 cttgcatatg tggagagagt tttggcttcg ggcaacagag cgttcttgcg
2001 ctttatgcca acttgttggg accaaatcag aggaatggct tagccagtta
2051 tttttctgat tttgaaagtc ccattcatat caagaaagtc catgccaaaa
2101 caaactctta tgaggggggt gaagctttaa aggaaatttt cactttttgt
2151 gagactattt tctatgaagc caccgaaatg gatactagga aagtgatgtt
2201 gcaaaatcaa ccagacgtct atcctagtat aagtcttgtt gggggggttt
2251 gtttcccaaa tgagggagga gagcctggag ccatgtactc ggaaacagat
2301 gttacgatgg ctagacaggt tcaaggagtc tatgtaagtg aagcgtgcgt
2351 gaaatgttgc aggcgttgtg taggagtagc aaccagggtt gtgactaata
2401 cgcaactttt tggcaacaat cttttaaaga ctcatcttaa ggctttgagg
2451 aaaattcaga atcatacatg ccttaggaaa taagccttcc aattcttggt
2501 actgggataa c