Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate CACSB4 segment RNA2 polyprotein gene, complete cds.
ACC No: GU972579
Dated: 2010-06-28 | Length: 3534 | CRC: 2131113567
ID GU972579; SV 1; linear; genomic RNA; STD; VRL; 3534 BP.
XX
AC GU972579;
XX
DT 28-JUN-2010 (Rel. 105, Created)
DT 28-JUN-2010 (Rel. 105, Last updated, Version 1)
XX
DE Grapevine fanleaf virus isolate CACSB4 segment RNA2 polyprotein gene,
DE complete cds.
XX
KW .
XX
OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-3534
RX PUBMED; 20540977.
RA Oliver J.E., Vigne E., Fuchs M.;
RT "Genetic Structure and Molecular Variability of Grapevine fanleaf virus
RT Populations";
RL Virus Res. 0:0-0(2010).
XX
RN [2]
RP 1-3534
RA Oliver J.E., Fuchs M.;
RT ;
RL Submitted (04-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West
RL North Street, Geneva, NY 14456, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3534
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera cultivar Cabernet Sauvignon"
FT /isolate="CACSB4"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="leaf"
FT /collection_date="16-Oct-2007"
FT /db_xref="taxon:12274"
FT CDS 1. .3333
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains homing protein (2A), movement protein (2B),
FT and coat protein (2C)"
FT /protein_id="ADJ10936.1"
FT /translation="MGKFYYSNRRLACWAAAKNTHLGGAVEQWLAAINTDPSFRQTVKE
FT DVQENRMRPEAIRMFSWKVGFGPIDNPEKCNWHFVLTGERPEQPTRPVKADEVVVVPQP
FT KKVVIPSPPPPPAPYFRTAGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ
FT GTPLKLSLAMKFAMLKHTTWRKWYDTSDKRLYGAHPGGPCLPPPPPIQKPPSFEERLHA
FT AVERQQCARAFALETSLGLNKAWVGIFDIPSTSVCCADGRTTGGQTIAQEADPLNHRVS
FT SNTAPGRAAWISERRSALRRREQAQSLRGLAAQTDMTFEQARNAYLGAADMIEQGLPLL
FT PPLGNAYMPRGLWRGPSTRANYTLDFRLNGIPTGENTLEILYNPVSDEEMDDYRDRGMS
FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNGLARAIFFPG
FT LQYSQEEPRRESLIRLYVASTNATVDPDSVLAAISVGTLRQHIGSLHYRTVASSVHTAQ
FT VQGTTPRATMMGNAVVVSPEGGLVTGVPEANVHIGGGSSMRMVGPLAWENVEEPGQTFS
FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDTI
FT SDFKGVQYERWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITISADPVY
FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ
FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ
FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIILWVVSEWNGTTMDWNEL
FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL
FT PIVVQIEEIVRPDLSLPSFEEDYFVWVDFSEFTLDKEEIEIGSRFFDFTSNTCRVSMGE
FT NPFAAMIACHGLHSGILDLKLQWSLNTEFGKSSGSVTITKLVGDKAMGLDGPSQVFALQ
FT KLEGTTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFNFYGRTS
FT FPV"
FT 3'UTR 3334. .>3534
XX
SQ Sequence 3534 BP; 852 A; 749 C; 911 G; 1022 T; 0 other;
gu972579 Length: 3534 28-JUN-2010 Type: N Check: 7942 ..
1 atgggcaaat tttattattc caacaggcgt cttgcctgtt gggctgcggc
51 aaagaacacc catctgggtg gtgccgttga acaatggctg gcggccatta
101 acactgaccc ctccttccgc caaactgtta aggaggatgt ccaggaaaac
151 cgaatgcgcc ctgaagccat ccggatgttt tcctggaagg tgggattcgg
201 gcccattgac aacccggaaa aatgcaactg gcatttcgtc cttacgggcg
251 aaaggccaga gcaaccgacc cggccggtta aagccgatga ggttgtggtg
301 gtgccacaac cgaagaaggt ggtgattcca tctccacctc ctcccccagc
351 tccctatttt aggactgctg gggcttttgc accaacccgg tccgggttta
401 ttcgggccac tgtggaaaga ctcacccggg aacgggaaga gtcgagagct
451 gcggcactct ttgccgaact gccattggag tatcctcagg gtactccttt
501 gaagttgagc ctggcaatga agtttgccat gctcaagcat accacttgga
551 ggaagtggta tgacactagt gataagcgcc tttacggggc tcatcctggt
601 ggtccttgtc ttcctccccc tcccccaatc caaaaaccac cctctttcga
651 ggagaggtta cacgctgctg tcgaaaggca gcagtgtgct agggcttttg
701 ccctagaaac ttcgctgggc ctgaataagg cctgggtggg aattttcgac
751 atcccaagca cttctgtgtg ctgtgcggat ggtcggacta ctggggggca
801 aacgatagcc caggaagctg accctcttaa tcacagggtc agttccaaca
851 cagcccccgg tagggcagct tggatctctg agcgtcgcag cgctctgaga
901 agaagggagc aagcacagag cttgcggggt cttgctgctc aaactgatat
951 gacgtttgag caggccagga atgcttatct tggcgctgcc gacatgatag
1001 agcaaggcct accgttacta cctcctctgg gaaatgctta catgcctcgt
1051 ggtctgtgga ggggaccttc taccagagcc aattatacgc ttgattttag
1101 gctcaatggt ataccaacag gggaaaatac tttggaaata ttgtataacc
1151 ctgtttcaga cgaggaaatg gatgactacc gtgacagggg tatgtcagca
1201 gtcgtgattg atgcgcttga aattgccatt aatccttttg ggatgccagg
1251 caatccgact gatcttactg tcgttgcaac atatgggcat gaacgcaata
1301 tggagcgtgc ctttattggt tcttcttcca cgtttcttgg aaatgggtta
1351 gcaagagcca ttttctttcc cggtttgcaa tatagccagg aagaacctag
1401 gcgtgaatct ttaattcgct tgtatgttgc ttcaactaac gccacagttg
1451 atcctgattc agttttggcg gccattagtg ttggaacttt gcgccagcac
1501 attggttcgt tgcattatag aactgtggct agttcggtgc atactgccca
1551 ggtgcaaggc acaaccccaa gggcgactat gatgggtaat gctgtcgtag
1601 tttctcctga aggaggcctt gtaactggtg tgcctgaagc caatgtacat
1651 attggtggag gttccagtat gcgaatggta ggtcccctgg catgggaaaa
1701 tgttgaggaa ccagggcaaa ccttctctat cagaagtcga tcgcgatctg
1751 tgaggattga caggaatgtt gaccttcctc aacttgaggc cgagcccaga
1801 ttgagttcga ccgtgagagg attagctggt agaggagtaa tttatattcc
1851 caaggattgc caggcaaaca ggtacttggg caccctgaat atacgtgaca
1901 cgatctcaga ttttaagggt gttcagtatg aaaggtggat aactgcaggg
1951 ttggtcatgc ctacttttaa gatagttgtt aggctacctg caaatgcctt
2001 tactggattg acatgggtga tgagctttga tgcttataat cggataacta
2051 gtagaattac tattagtgcg gatcctgttt ataccctttc agtccctcat
2101 tggcttatcc accataagtt gggcacgttt tcatgtgaaa ttgactatgg
2151 agaattgtgt ggtcatgcta tgtggttcaa gtccacaaca tttgaatctc
2201 ctaggttgca ttttacatgt ttgacgggca acaacaaaga gttggcagca
2251 gattggcaag ctgttgtgga actatatgct gaattggaag aagccacatc
2301 ttttcttggg aaaccaacat tggtttttga cccaggtgtt tttgatggta
2351 aattccagtt tttaacttgc cctcccattt tctttgattt aacagccgtc
2401 acggctctta ggagtgctgg actgacattg ggacaggtcc caatggttgg
2451 tactactaag gtgtataacc taaatagcac tcttgtgagt tgtgttttgg
2501 gcatgggagg tactattaga ggaagggtgc atatttgtgc tccaatcttc
2551 tatagtataa ttttgtgggt tgttagtgag tggaacggga ccactatgga
2601 ttggaacgaa ctttttaagt atcccggggt gtatgtggaa gaagatggaa
2651 gctttgaagt taaaatccgt tctccatatc accgaacgcc tgctagattg
2701 cttgctggtc aaagccagag ggacatgagc tctctgaatt tctatgcaat
2751 agcagggccc attgctccat caggggaaac agcacgactc cctattgttg
2801 tacaaattga agaaattgtg cgtccagacc tttccctacc aagttttgag
2851 gaagattact ttgtgtgggt ggatttttct gaattcactc ttgacaaaga
2901 agaaattgag attggttctc gtttctttga ttttacttca aatacttgta
2951 gggtttctat gggagagaac ccgttcgcgg caatgattgc ttgccatgga
3001 ttacatagtg gtatattgga cctcaaactt caatggagtc taaatactga
3051 atttggcaag agcagtggga gcgtcaccat tacaaagctg gttggtgaca
3101 aggccatggg cctggatggg ccttcacaag tgtttgcctt acaaaaactg
3151 gagggaacta cggagttgtt gattggaaat tttgcaggtg caaatccaaa
3201 cactcatttt tctctctata gtcgatggat ggcaatcaaa ttggaccaag
3251 cgaagagtat caaggtactc cgcgttttgt gtaaaccccg tccgggtttt
3301 aatttttatg gaagaaccag ctttccagtc tagggtatcc gactttaaaa
3351 gacccatata catacgttta tttttgttgt aattgtgtgt aatgttttgt
3401 gttattgttt gttttaactt gtttaccgct ttttgtgtgt ttattttcat
3451 gctttcggtg gcgacagtgt gttgtttgtc ctttggacac acttgccttg
3501 tcggacataa aaagattttc ctttcttttt actg