Sequence of DPV Faba bean necrotic stunt virus

Faba bean necrotic stunt virus isolate Holetta-1997 segment DNA-N, complete sequence.

ACC No: GU983870

Dated: 2010-06-27 | Length: 980 | CRC: 756799343

                
ID   GU983870; SV 1; circular; genomic DNA; STD; VRL; 980 BP.
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AC   GU983870;
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DT   27-JUN-2010 (Rel. 105, Created)
DT   27-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE   Faba bean necrotic stunt virus isolate Holetta-1997 segment DNA-N, complete
DE   sequence.
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KW   .
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OS   Faba bean necrotic stunt virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-980
RA   Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.-J.,
RA   Gronenborn B.;
RT   "High Variability and Rapid Evolution of a Nanovirus";
RL   J. Virol. 0:0-0(2010).
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RN   [2]
RP   1-980
RA   Grigoras I., Gronenborn B.;
RT   ;
RL   Submitted (08-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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CC   GenBank Accession Numbers GU983866-GU983873 represent the complete
CC   genome of Faba bean necrotic stunt virus isolate Holetta-1997.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .980
FT                   /organism="Faba bean necrotic stunt virus"
FT                   /segment="DNA-N"
FT                   /host="Vicia faba"
FT                   /strain="Ethiopia:Holetta"
FT                   /isolate="Holetta-1997"
FT                   /mol_type="genomic DNA"
FT                   /country="Ethiopia:Holetta"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="K.M. Makkouk"
FT                   /collection_date="Oct-1997"
FT                   /identified_by="L. Katul and H.-J. Vetten"
FT                   /note="acronym: FBNSV-[ET:Hol] DNA-N"
FT                   /db_xref="taxon:283824"
FT   stem_loop       join(961. .980,1. .13)
FT                   /note="part of replication origin"
FT   misc_feature    join(974. .980,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   misc_feature    1
FT                   /note="first base of viral (+) strand"
FT   TATA_signal     283. .289
FT   CDS             336. .797
FT                   /codon_start=1
FT                   /product="nuclear shuttle protein"
FT                   /protein_id="ADJ00310.1"
FT                   /translation="MADWFSSPLKTCTHVCDFPSLAGNPQQEIMCCDSMKDKLNDSRKV
FT                   LLVSCSVSFNGSFYGGNRNVRGQLQISMMEDDGVCRPIGYLPIGGYLYHNDYGYYEGQR
FT                   TFNLDIESQYLKKDEDYRRKFIITVLNENGLDSQCDLKMFIVHSLRIKV"
FT   polyA_signal    818. .823
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SQ   Sequence 980 BP; 270 A; 170 C; 215 G; 325 T; 0 other;

gu983870 Length: 980  27-JUN-2010  Type: N  Check: 3907  ..

       1  acccccgccc caggttcagc ggagtcattg agactccatc tcagccgttc
      51  attgaataga cacgtgtaca atcaggatct gtgattcgtg aagcgaatct
     101  gacggaagat tgtacactat tctctatctc attaatacgc gtggcaagct
     151  ctcattggat attgagttag tgggaatctt atcttttcac gcggtttgct
     201  tttaacgcgc tttgctttta agtgggtcct atattacttt cgttccacga
     251  aagcacgtgc tatcttctca aggaagcttt ggtatatatc gtctttaaat
     301  acaaagcttc ttcttcgttt ggaagttgca gaaaaatggc agattggttt
     351  tctagtcctt tgaagacatg tacacacgtc tgcgacttcc cttctcttgc
     401  tggaaatcca cagcaagaga ttatgtgttg tgatagcatg aaagacaagc
     451  tcaacgattc aagaaaggtt ctgcttgtta gttgcagtgt gagcttcaat
     501  ggtagtttct atggtggaaa caggaacgtt cgtggtcagt tgcagatatc
     551  tatgatggaa gacgacggtg tttgtcgacc aattggatat ttaccaattg
     601  gtggttatct gtatcataat gattatggct attacgaagg tcagaggacg
     651  tttaatctcg acatcgagtc tcagtatttg aagaaagatg aagattatag
     701  aagaaaattt ataattaccg ttcttaatga gaacgggtta gatagtcagt
     751  gtgatttgaa aatgtttatt gtacattcac tcagaatcaa agtgtaatta
     801  gttgtgatga tgtaattaat aatacttgtt attactgact aatatcattt
     851  atattattat tattgttttt aattactctg cgaagctata tgtctcagcc
     901  caataggccc aatagtctta aggcccaata gaagatgacg tcatttgatc
     951  ccgtgctgag ctggggcggg gcttagtatt