Sequence of DPV Faba bean necrotic stunt virus
Faba bean necrotic stunt virus isolate Holetta-1997 segment DNA-U1, complete sequence.
ACC No: GU983871
Dated: 2010-06-27 | Length: 985 | CRC: -214571039
ID GU983871; SV 1; circular; genomic DNA; STD; VRL; 985 BP.
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AC GU983871;
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DT 27-JUN-2010 (Rel. 105, Created)
DT 27-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE Faba bean necrotic stunt virus isolate Holetta-1997 segment DNA-U1,
DE complete sequence.
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KW .
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OS Faba bean necrotic stunt virus
OC Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN [1]
RP 1-985
RA Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.-J.,
RA Gronenborn B.;
RT "High Variability and Rapid Evolution of a Nanovirus";
RL J. Virol. 0:0-0(2010).
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RN [2]
RP 1-985
RA Grigoras I., Gronenborn B.;
RT ;
RL Submitted (08-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Institut des Sciences du Vegetal, Centre National de la Recherche
RL Scientifique, Gif sur Yvette 91198, France
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CC GenBank Accession Numbers GU983866-GU983873 represent the complete
CC genome of Faba bean necrotic stunt virus isolate Holetta-1997.
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FH Key Location/Qualifiers
FH
FT source 1. .985
FT /organism="Faba bean necrotic stunt virus"
FT /segment="DNA-U1"
FT /host="Vicia faba"
FT /strain="Ethiopia:Holetta"
FT /isolate="Holetta-1997"
FT /mol_type="genomic DNA"
FT /country="Ethiopia:Holetta"
FT /isolation_source="plant tissue"
FT /collected_by="K.M. Makkouk"
FT /collection_date="Oct-1997"
FT /identified_by="L. Katul and H.-J. Vetten"
FT /note="acronym: FBNSV-[ET:Hol] DNA-U1"
FT /db_xref="taxon:283824"
FT stem_loop join(968. .985,1. .11)
FT /note="part of replication origin"
FT misc_feature join(979. .985,1. .2)
FT /note="conserved nonanucleotide at replication origin"
FT misc_feature 1
FT /note="first base of viral (+) strand"
FT TATA_signal 256. .262
FT CDS 352. .825
FT /codon_start=1
FT /product="U1 protein"
FT /protein_id="ADJ00311.1"
FT /translation="MPLVDYLLVDEATEELITSERKRRSVVCSDDDSQVINVKVEDIAI
FT DLEDRVVVKLKFRLCYKYRRLLDLTLLGCRMKVHTVLKTTSAPSLKSVLQKRLNMICDG
FT NHLISIRLFFININQLINNCKWISSVEDVYPICTLYHIQDSNVINANEIFNNT"
FT polyA_signal 814. .819
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SQ Sequence 985 BP; 282 A; 158 C; 198 G; 347 T; 0 other;
gu983871 Length: 985 27-JUN-2010 Type: N Check: 9963 ..
1 acccccgtcc cgggttcaga gtcacgtacg gagtgactaa tagccgttgg
51 attatcttac acgtggacga tcaggatctg tgattcgtga agcgaatctg
101 acggaagatc gttcacactc acgtggtagg tcccgacaat tgcttttgct
151 ttactttatc taaagtaaag caagtgggtc tactttaatt attctttttt
201 ggtggagtac agctgtcttt gcttcttcac gaagcaaagg actttctctc
251 tcttctataa aaaagctgta tgtgcagaag atgaattcgt tcattcatct
301 tcttctacat caaatcatct tctctcatca acattaagct tatatagctc
351 tatgcctttg gtcgattatt tgttggttga tgaggctact gaagagttaa
401 taacgtcaga gaggaaacgt agatcagtcg tatgttctga tgatgattct
451 caggtaatca atgtcaaagt tgaagatata gctattgatt tggaagacag
501 agttgtcgtt aagttgaagt tcagattatg ttataaatac aggaggttgc
551 ttgatttaac gcttcttggc tgtcgtatga aagttcatac tgtattgaag
601 accacctctg ctccatcgtt gaagagtgtt ttgcagaaga gacttaatat
651 gatttgtgat ggtaatcatt taatatcaat tagattgttt ttcattaata
701 ttaatcagtt gattaataat tgtaaatgga tatcatctgt agaagatgta
751 tatccaatat gtactttgta tcatattcaa gattcaaatg taattaatgc
801 taatgagata tttaataata cttaatatgt atttgtttat attgatattg
851 tttttaatta ctctgcgaag ctatatgtct cggcccaata ggcccaatag
901 tcttaaggcc caataaattt tacattaaat tggatcagct gacgtcagct
951 gatcccgtga tgacgtaggg acggggctta gtatt