Sequence of DPV Faba bean necrotic stunt virus

Faba bean necrotic stunt virus isolate Holetta-1997 segment DNA-U2, complete sequence.

ACC No: GU983872

Dated: 2010-06-27 | Length: 983 | CRC: -866150444

                
ID   GU983872; SV 1; circular; genomic DNA; STD; VRL; 983 BP.
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AC   GU983872;
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DT   27-JUN-2010 (Rel. 105, Created)
DT   27-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE   Faba bean necrotic stunt virus isolate Holetta-1997 segment DNA-U2,
DE   complete sequence.
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KW   .
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OS   Faba bean necrotic stunt virus
OC   Viruses; ssDNA viruses; Nanoviridae; Nanovirus.
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RN   [1]
RP   1-983
RA   Grigoras I., Timchenko T., Grande-Perez A., Katul L., Vetten H.-J.,
RA   Gronenborn B.;
RT   "High Variability and Rapid Evolution of a Nanovirus";
RL   J. Virol. 0:0-0(2010).
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RN   [2]
RP   1-983
RA   Grigoras I., Gronenborn B.;
RT   ;
RL   Submitted (08-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Institut des Sciences du Vegetal, Centre National de la Recherche
RL   Scientifique, Gif sur Yvette 91198, France
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CC   GenBank Accession Numbers GU983866-GU983873 represent the complete
CC   genome of Faba bean necrotic stunt virus isolate Holetta-1997.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .983
FT                   /organism="Faba bean necrotic stunt virus"
FT                   /segment="DNA-U2"
FT                   /host="Vicia faba"
FT                   /strain="Ethiopia:Holetta"
FT                   /isolate="Holetta-1997"
FT                   /mol_type="genomic DNA"
FT                   /country="Ethiopia:Holetta"
FT                   /isolation_source="plant tissue"
FT                   /collected_by="K.M. Makkouk"
FT                   /collection_date="Oct-1997"
FT                   /identified_by="L. Katul and H.-J. Vetten"
FT                   /note="acronym: FBNSV-[ET:Hol] DNA-U2"
FT                   /db_xref="taxon:283824"
FT   stem_loop       join(964. .983,1. .13)
FT                   /note="part of replication origin"
FT   misc_feature    join(977. .983,1. .2)
FT                   /note="conserved nonanucleotide at replication origin"
FT   misc_feature    1
FT                   /note="first base of viral (+) strand"
FT   TATA_signal     259. .265
FT   CDS             330. .695
FT                   /codon_start=1
FT                   /product="U2 protein"
FT                   /protein_id="ADJ00312.1"
FT                   /translation="MDAGFEYNLSMREIMLLKEEQDRFWSSYHDFLRAHEDVLGEFCRL
FT                   HGRRVLAYPRLPSYAPTRLVLKSRTVYDIRVDECKTCIAECKNSSCNNDGSLEGLCDLY
FT                   DYGNYRYQVRYSNTSCN"
FT   polyA_signal    705. .710
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SQ   Sequence 983 BP; 290 A; 172 C; 206 G; 315 T; 0 other;

gu983872 Length: 983  27-JUN-2010  Type: N  Check: 4960  ..

       1  acccccgccc caggttcagc ggagtcatca cgtgagacgc acatgctatt
      51  aaatgaatta taattaaata agtgggggat ggtccccact ccgcactaac
     101  ttcaaataca ctgaatatat gctttgcttc gtcacgaagc aaaggtaaag
     151  aataaaaact ggtccccaca acgctttata tgcaattcag tggattcaaa
     201  cgagtggttg atattcatta cgttaaaata gcttacagag gaagcttggg
     251  ttatgtacta taaattcaat atatctgaat tgtttattca gatcgtcttc
     301  ttccatcccc attttctgtt ttggttctta tggatgccgg ctttgagtat
     351  aatctctcta tgagagagat tatgttattg aaagaagaac aagaccgctt
     401  ttggagctca tatcacgatt ttcttcgtgc ccacgaagat gttcttggtg
     451  aattctgcag actccatgga agaagagttc tagcgtatcc aaggttacct
     501  agctatgctc ctactcgttt ggtccttaaa tctagaactg tatatgatat
     551  tagagtagat gaatgcaaaa cttgtattgc agaatgtaaa aacagttctt
     601  gtaataacga tggcagtcta gaaggtttat gtgatttata tgactatggt
     651  aattacagat atcaagttcg ttattctaat acttcatgta attaagatat
     701  atgtaatata tttgaagcat aattaatgca gtgatgaaat taatatgttg
     751  ttgttgtctt gtgtaattgt tgtgttgttg aagaaccaga gagtcccaag
     801  gtagaagaca actactatac acgtgttatc acgggattgg ttattattat
     851  ttgggtttac tccgcgtagc ggtatgcttc agcccaatag gcccaattgc
     901  tctcaaggcc caatagaatg accaatagga atgaagcatg acgtcatttg
     951  atcccgtgct gagctggggc ggggcttagt att