Sequence of DPV Papaya leaf crumple virus
Papaya leaf crumple virus complete genome, clone KN6
ACC No: HE580236
Dated: 2013-01-28 | Length: 2737 | CRC: -1614820464
ID HE580236; SV 1; circular; genomic DNA; STD; VRL; 2737 BP.
XX
AC HE580236;
XX
DT 15-AUG-2011 (Rel. 109, Created)
DT 28-JAN-2013 (Rel. 115, Last updated, Version 3)
XX
DE Papaya leaf crumple virus complete genome, clone KN6
XX
KW complete genome.
XX
OS Papaya leaf crumple virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2737
RA Ilyas M.;
RT ;
RL Submitted (13-AUG-2011) to the INSDC.
RL Ilyas M., School of Biological Sciences, University of the Punjab (New
RL Campus), 54590, PAKISTAN.
XX
RN [2]
RA Ilyas M., Nawaz K., Shafiq M., Haider M.S., Shahid A.A.;
RT "Complete nucleotide sequences of two begomoviruses infecting Madagascar
RT periwinkle (Catharanthus roseus) from Pakistan";
RL Arch. Virol. 158(2):505-510(2013).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2737
FT /organism="Papaya leaf crumple virus"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Lahore"
FT /isolation_source="Papaya leaf"
FT /collected_by="Kiran Nawaz"
FT /clone="KN6"
FT /db_xref="taxon:928315"
FT CDS 121. .459
FT /gene="av2"
FT /product="AV2 protein"
FT /db_xref="GOA:G0W303"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:G0W303"
FT /protein_id="CCD22083.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYHHFNARLEGTPPSQLRQPICEPCCCPHCPRHKSKGLDQQAHEP
FT KAQDVQDV"
FT CDS 281. .1051
FT /gene="av1"
FT /product="coat protein"
FT /db_xref="GOA:G0W304"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:G0W304"
FT /protein_id="CCD22084.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(1048. .1452)
FT /gene="ac3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:G0W305"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:G0W305"
FT /protein_id="CCD22085.1"
FT /translation="MDSRTGESITAAQAMNGVYIWETPNPLYFKILNHDQRPLNMNHDI
FT IDIRVQFNHNLRKRLGIMKCFLGLRIHTRLHLQTWHFLRVFKTQVLRYLDSLGVISINN
FT CITAFRHVLYDVLEGTINVIEDHDIKFNIY"
FT CDS complement(1193. .1600)
FT /gene="ac2"
FT /product="transcriptional activator protein"
FT /db_xref="GOA:G0W306"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:G0W306"
FT /protein_id="CCD22086.1"
FT /translation="MQHSSPSQSHCTQVPIKVQHRLAKRRAIRRKRVDLECGCSYYVHI
FT NCHNHGFTHRGIHHCSSSNEWRVYLGNPKSPLFQDPQPRPKATQHEPRHHRHQGPVQSQ
FT PQEETGDNEVFLGLEDPHSFTSSDLAFLKSL"
FT CDS complement(1524. .2588)
FT /gene="ac1"
FT /product="replication associated protein"
FT /db_xref="GOA:G0W307"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:G0W307"
FT /protein_id="CCD22087.1"
FT /translation="MAPPKRFQVYAKNFFLTYPKCSLTKEEALTQLQNLQTPVNKKYIK
FT ICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM
FT EKDGDTLDWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALRVIRELAPKDYVLQFH
FT NLNANLDRIFAPPMEVYVSPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNIIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALRSWAIHNATFITLTEPL
FT YSGTHQGPTQASQA"
FT CDS complement(2129. .2431)
FT /gene="ac4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:G0W308"
FT /protein_id="CCD22088.1"
FT /translation="MGNLIFTCSSSSKENTSAKITGSSTWYPQPGQHISIRTFRELSRA
FT QMSSPIWRRMETPSTGESFRSMDDLQEGDNSQPMMLTPKQLIQAVSQRLLESLGN"
XX
SQ Sequence 2737 BP; 720 A; 561 C; 653 G; 803 T; 0 other;
he580236 Length: 2737 28-JAN-2013 Type: N Check: 34 ..
1 accggatggc cgcgcaaatt ttttaggtgg gccctcaacc aatgaaattc
51 atgctacatg gcctatttat tgcgggggga ccaataaata gacttgctca
101 ccaagtttgt atcgacaaac atgtgggacc cactattgaa tgagtttcca
151 gaaactgttc atgggtttag gtgcatgttg gcagtgaaat acctccagct
201 agtagaaaat acgtattccc cagacactct gggatacgat ttaattaggg
251 atttaatttc agttattagg gctcggaatt atgtcgaagc gaccagcaga
301 tatcatcatt tcaacgcccg cctcgaaggt acgccgccgt ctcaacttcg
351 acagcccata tgcgagccgt gctgctgccc ccattgtccg cgtcacaaaa
401 gcaagggcct ggaccaacag gcccatgaac cgaaagccca ggatgtacag
451 gatgtatagg agcccagatg ttccaagggg ctgtgaaggc ccgtgtaagg
501 tccagtcatt tgagtccaga catgatatcc agcacattgg gaaagtcatg
551 tgtgttagtg atgttactcg tggtattggg ctgacccaca gggttggcaa
601 gaggttctgt gtgaagtccg tctatgtatt gggcaagatt tggatggatg
651 agaacatcaa gactaagaat catacgaata gtgttatgtt tttccttgtt
701 agggatcgta ggcctgttga caagcctcaa gattttggtg aggtttttaa
751 catgtttgat aatgagccca gcacggcgac tgtgaagaat gttcatcgtg
801 acagatatca ggtgttaagg aagtggcatg ccactgtgac aggcggttta
851 tacgcatcga aggagcaggc tctcgtgaag aagtttatta gggtcaataa
901 ttatgttgtg tacaaccagc aagaggctgg caagtatgag aatcatactg
951 agaatgcatt gatgttgtat atggcgtgta cgcacgcctc taaccctgtg
1001 tatgctacat tgaagatacg gatctacttc tatgattcag tatcgaatta
1051 ataaatattg aactttatat catgatcctc aattacatta attgtgccct
1101 caagtacatc atataataca tgtctgaaag ccgtaataca attatttata
1151 ctaattacgc ctaaactatc taaatatctt aaaacttgag tcttaaagac
1201 tcttaagaaa tgccaagtct gaagatgtaa acgagtgtgg atcctcaagc
1251 ccaagaaaca cttcattatc cccagtctct tcctgaggtt gtgattgaac
1301 tggaccctga tgtcgatgat gtcgtggttc atgttgagtg gcctttggtc
1351 gtggttgagg atcttgaaat agaggggatt tggggtttcc cagatataca
1401 cgccattcat tgcttgagct gcagtgatgg attcccctgt gcgtgaatcc
1451 atggttgtgg cagttgatgt gtacgtagta tgagcagcca cactcgaggt
1501 caaccctctt acgccggatg gctctacgct tggctagcct gtgttggacc
1551 ttgatgggta cctgagtaca gtggctctgt gagggtgatg aatgttgcat
1601 tatgtatagc ccacgacctc aatgctgagt tcttttcctc atcgaggtat
1651 tctttatagc tggaattggg cccaggattg cagaggaaga tagtgggtat
1701 acctccttta atttgaactg gtttcccgta cttggtgtta ctttgccagt
1751 ccctctgggc ccccatgaac tctttaaagt gctttaggta gtgggggtct
1801 acgtcatcaa tgatgttata ccatgcatca tttgaatata tcttgggact
1851 cagatctaaa tggccacaca ggtaattgtg tggtcccaaa gacctggccc
1901 acattgtctt gcccgtacga ctatcaccct caatgacaat acttttaggt
1951 ctcaatggcc gcgcagcggg acccatcaca ttttcagagg cccattcctc
2001 tatggcctct ggaacttgat cgaaggaaga tgaaagaaaa ggggaaacat
2051 aaacctccat tggaggtgca aaaatcctat ctaaattagc attaagatta
2101 tgaaattgta agacataatc ctttggggct aattccctaa tgactctaag
2151 agcctctgac ttactgcctg tattaattgc tttggcgtaa gcatcattgg
2201 ctgactgttg tccccctctt gcagatcgtc catcgatctg aaactctccc
2251 cagtcgaggg tgtctccatc cttctccata taggacttga catctgagct
2301 cgacttagct ccctgaatgt tcggatggaa atgtgctgac ctggttgggg
2351 ataccaggtc gaagaacctg ttattttggc acttgtattt tccttcgaac
2401 tggatgagca cgtgaagatg aggttcccca ttttcgtgga gctctctgca
2451 gatttttatg tattttttat ttactggggt ttgtaggttc tgaagttggg
2501 tgagtgcctc ttctttagta agagagcatt ttggataagt gagaaagaaa
2551 tttttggcat atacttgaaa acgcttggga ggagccattg acttggtcaa
2601 tcggtactca gcactagtcc tatggcaatt ggtgatcagt actcaatata
2651 tagtgagtac caaatggcag aattgtaatt tggaaaagaa aattacttta
2701 attcaaattc ccataaagcg gccatccgta taatatt