Sequence of DPV Canna yellow streak virus

Canna Yellow Streak Virus partial gene for polyprotein, NIb and coat protein region, genomic RNA, isolate PHC478, clone 9C4

ACC No: HE774739

Dated: 2012-05-10 | Length: 1256 | CRC: 1701537388

                
ID   HE774739; SV 1; linear; genomic RNA; STD; VRL; 1256 BP.
XX
AC   HE774739;
XX
DT   10-MAY-2012 (Rel. 112, Created)
DT   10-MAY-2012 (Rel. 112, Last updated, Version 1)
XX
DE   Canna Yellow Streak Virus partial gene for polyprotein, NIb and coat
DE   protein region, genomic RNA, isolate PHC478, clone 9C4
XX
KW   .
XX
OS   Canna Yellow Streak Virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1256
RA   Laprom A.;
RT   ;
RL   Submitted (10-MAR-2012) to the INSDC.
RL   Kasetsart University, Plant Pathology, Nakon Pathom, 73140, THAILAND.
XX
RN   [2]
RA   Laprom A.;
RT   "The detection of Canna yellow streak virus in Thai canna rhizome and plant
RT   part by PCR";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1256
FT                   /organism="Canna Yellow Streak Virus"
FT                   /host="Canna sp."
FT                   /isolate="PHC478"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="host leaves"
FT                   /clone="9C4"
FT                   /db_xref="taxon:433462"
FT   CDS             <1. .1086
FT                   /product="polyprotein"
FT                   /note="NIb and coat protein region"
FT                   /protein_id="CCG55103.1"
FT                   /translation="DLTQHIRKFYQWVLDQEPYKGLALQGKAPYLSESALKKLYLDTAV
FT                   QDSELFEYYKAIYADLEQQQDDILEVEHQATEDAGVVADDDKVKKVDAKDSSKNTGGTK
FT                   DKGNTSIANVDNPGGQEVKSVEKDVDTGTVGKFTIPKLKKVSPKMRLPRIGNQTLLNIE
FT                   HLITYEPDQRDISNTRATHSQFKQWYEQIKKEYDVDDDQMQIILNGFMVWAIENGTSPN
FT                   VNGYWVMMDDQEQVEYPLKPIVEHAKPTLRQCMMHFSDAAEAYIEMRNLKQPYMPRYGL
FT                   LRNLNDKSLARFAFDFYEVTSRTPNRAREAHAQMKAASIHGGTNNLFGLDGNVGETSEN
FT                   TERHVATDVNKNTHSYRGAQL"
XX
SQ   Sequence 1256 BP; 429 A; 242 C; 292 G; 293 T; 0 other;

he774739 Length: 1256  10-MAY-2012  Type: N  Check: 700  ..

       1  gatctaacgc aacatattcg aaagttctat caatgggtgt tggaccagga
      51  accatacaaa ggactagcgc tacaagggaa agctccgtat ttgtccgaaa
     101  gcgctttaaa gaagttatac ttagacacag ctgtccaaga ttctgagttg
     151  tttgagtact ataaggcgat ttatgcagat ttggaacaac aacaggatga
     201  catattggaa gtcgagcacc aagcaactga agatgcggga gttgttgctg
     251  acgatgacaa ggtgaagaaa gtggatgcta aagatagcag caagaatact
     301  ggaggaacca aggacaaggg aaacacgtca attgcaaatg ttgacaatcc
     351  aggtggacaa gaggtcaagt ctgtggagaa ggatgttgac acagggacgg
     401  ttggcaagtt taccatcccg aagttgaaga aagtgtcacc aaaaatgcga
     451  ctaccaagaa ttggaaatca aacgctattg aacatcgagc atctcataac
     501  atatgaaccg gaccaacgtg acatttcaaa cacacgagcc acgcattcac
     551  agttcaaaca gtggtatgag caaatcaaga aggaatacga tgtggacgat
     601  gaccaaatgc aaattattct caatggcttt atggtttggg caattgagaa
     651  tggaacatca ccaaacgtca acggatattg ggtaatgatg gatgatcaag
     701  aacaagtaga atacccactt aaaccaattg tggaacacgc caaacccaca
     751  ttgcgtcagt gtatgatgca tttcagtgat gcagcagaag catatattga
     801  aatgagaaat ctcaagcaac cgtacatgcc cagatacggt ttactcagga
     851  acttgaatga taaaagcctc gcacgcttcg catttgattt ttatgaagta
     901  acttcacgaa caccaaatcg agcacgggaa gcacatgcac agatgaaagc
     951  agcatcaatc catggaggaa cgaacaactt atttggatta gatggaaatg
    1001  ttggcgaaac ttctgagaac acggagagac atgtggcaac agatgtaaat
    1051  aagaatacgc actcgtatcg cggtgcgcag ctttaaactt atctgtttct
    1101  ctacgtaatt aaataaataa atgccaccaa ctgggaggca ctagtaatgt
    1151  aagtcggtct gcacctttct gagtgatgtt tacatcctgt catactagtt
    1201  gcaatgctgt tctcagttac caactggtgc acctgaaagg tcgtgtttac
    1251  tagtag