Sequence of DPV Simbu virus

Simbu virus N and NSs genes, segment S, genomic RNA, isolate SA Ar 53

ACC No: HE795110

Dated: 2012-08-20 | Length: 860 | CRC: 615389496

                
ID   HE795110; SV 1; linear; genomic RNA; STD; VRL; 860 BP.
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AC   HE795110;
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DT   20-AUG-2012 (Rel. 113, Created)
DT   20-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Simbu virus N and NSs genes, segment S, genomic RNA, isolate SA Ar 53
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KW   .
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OS   Simbu virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Orthobunyavirus.
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RN   [1]
RP   1-860
RA   Hoeper D.;
RT   ;
RL   Submitted (19-MAR-2012) to the INSDC.
RL   Friedrich-Loeffler-Institute, Federal Resaerch Institute for Animal Health,
RL   Institue of Diagnostic Virology, Suedufer 10, Greifswald - Insel Riems
RL   17493, GERMANY.
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RN   [2]
RX   DOI; org/10.3201/eid1810.120835.
RA   Goller K., Hoeper D., Schirrmeier H., Mettenleiter T.C., Beer M.;
RT   "Schmallenberg virus as possible ancestor of Shamonda virus";
RL   Emerg. Infect. Dis. 0:0-0(2012).
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CC   related sequences HE795108, HE795109.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .860
FT                   /organism="Simbu virus"
FT                   /segment="S"
FT                   /isolate="SA Ar 53"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:35306"
FT   CDS             25. .726
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="CCG93497.1"
FT                   /translation="MANQFIFEDVPQRNLSTFSPEAGYVAFIGRYGQQLNFSVVRVFFL
FT                   NQKKAKMVLHKTAQPNVDLTFGGVKFTLVNNNFPQYTANPVPDNALTLHRLSGYLARWT
FT                   AEQVKNNQVKLAEATAAIVMPLAEVKGCTWNDGYTMYLGFAPGAEMFLETFEFFPLVID
FT                   MHRVLKDGMDVNFMRKALRQRYGLLTAEQWMTQKIVEVKAAFDAVGQIAWAKSGFSPAA
FT                   RAFLQQFGITV"
FT   CDS             50. .325
FT                   /gene="NSs"
FT                   /product="non-structural protein"
FT                   /protein_id="CCG93498.1"
FT                   /translation="MYLNGTYLHLVRRQGMWHLLVGMGNNLTSVLLESSSSTRRRPKWS
FT                   YIRRHNQMLILLLEGSNLHWLITIFPNTQLIRCQTMPSPSTGSLDI"
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SQ   Sequence 860 BP; 241 A; 183 C; 176 G; 260 T; 0 other;

he795110 Length: 860  20-AUG-2012  Type: N  Check: 4403  ..

       1  ctccactatt aactatatta ttaaatggca aaccaattca tttttgagga
      51  tgtacctcaa cggaacttat ctacatttag tccggaggca gggtatgtgg
     101  catttattgg tcggtatggg caacaactta acttcagtgt tgttagagtc
     151  ttcttcctca accagaagaa ggccaaaatg gtcttacata agacggcaca
     201  accaaatgtt gatcttactt ttggaggggt caaatttaca ctggttaata
     251  acaattttcc ccaatacaca gctaatccgg tgccagacaa tgccctcacc
     301  ctccacaggc tctctggata tctagctaga tggacagcag agcaagttaa
     351  gaacaatcaa gtgaaacttg ctgaagctac tgctgcaatt gttatgcctc
     401  tggctgaagt caaaggatgc acctggaatg atggctatac catgtatctt
     451  ggatttgcac caggagcgga aatgtttcta gagacatttg aatttttccc
     501  tcttgtcatc gatatgcata gagttttaaa agatggcatg gatgtaaact
     551  ttatgcggaa agctcttcgc cagaggtatg ggctgcttac tgcagaacaa
     601  tggatgactc aaaagattgt tgaagtcaaa gcagcattcg atgcagttgg
     651  gcaaatagct tgggctaaat ctggcttctc ccctgctgct agagccttcc
     701  tgcagcagtt tggtatcact gtgtaaactt tccaaaaaat cttatcatcc
     751  tctcattttc atcctttcac ttcctagtac aacatgtcta tgtgttgtac
     801  gccatttcag cagcttgtat cttcattatc tgtatagtta attagtggag
     851  cacactactg