Sequence of DPV Pedilenthus leaf curl virus

Tomato leaf curl Pakistan virus CP and REn genes, clone M6

ACC No: HF565177

Dated: 2013-02-25 | Length: 1080 | CRC: 412622686

                
ID   HF565177; SV 1; linear; genomic DNA; STD; VRL; 1080 BP.
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AC   HF565177;
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DT   25-FEB-2013 (Rel. 115, Created)
DT   25-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE   Tomato leaf curl Pakistan virus CP and REn genes, clone M6
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KW   .
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OS   Tomato leaf curl Pakistan virus
OC   Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC   unclassified Begomovirus.
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RN   [1]
RP   1-1080
RA   Afzal Z.;
RT   ;
RL   Submitted (07-DEC-2012) to the INSDC.
RL   Afzal Z., NIBGE, Agricultural biotechnology division, NIBGE Jhang road,
RL   Faisalabad, PO Box 577, 38000, PAKISTAN.
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RN   [2]
RA   Afzal Z., Tahir N., Amin I., Mansoor S.;
RT   "Association of multiple begomoviruses and Cotton leaf curl Multan
RT   betasatellite with leaf curl disease of mint in Pakistan";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1080
FT                   /organism="Tomato leaf curl Pakistan virus"
FT                   /host="Mentha spicata"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Faisalabad"
FT                   /collected_by="Zunaira Afzal"
FT                   /collection_date="23-Dec-2010"
FT                   /clone="M6"
FT                   /db_xref="taxon:341711"
FT   CDS             50. .676
FT                   /gene="CP"
FT                   /product="Coat Protein"
FT                   /protein_id="CCP37713.1"
FT                   /translation="MNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCIS
FT                   DVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPHDF
FT                   GEVFDMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVY
FT                   NQQEAGMYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(673. .1077)
FT                   /gene="REn"
FT                   /product="replication enhancer protein"
FT                   /protein_id="CCP37714.1"
FT                   /translation="MDSRTGGSITAAQAENGVYIWEIQTPLYFKITEHHNRPLNMNHDI
FT                   ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGIVSINN
FT                   VVRAVDHVLWNVLEHIVYVDQSSSIKFNIY"
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SQ   Sequence 1080 BP; 296 A; 201 C; 269 G; 314 T; 0 other;

hf565177 Length: 1080  25-FEB-2013  Type: N  Check: 3873  ..

       1  gattcccatt gtccgcgtca cggaggcaag ggcatgggcg aacaggccca
      51  tgaaccggaa accaagattt taccggatgt atcgaagctc tgacgtgccc
     101  aggggctgtg aaggcccatg taaggtgcaa tcttttgaat ccaggcacga
     151  tgtctcccat attggtaagg tcatgtgtat tagtgatgta actaggggta
     201  ccggtttaac tcatagggtt ggcaagaggt tctgtgtgaa gtccgtctac
     251  gtgctgggca agatctggat ggacgagaat attaagacga agaaccacac
     301  aaatagtgtt atgttttttc ttgttaggga tcgaaggccc gttgacaagc
     351  ctcacgattt tggagaggtt tttgacatgt ttgataatga gcccagcacg
     401  gcgactgtga agaatgttca tcgtgatagg taccaggttc tgaggaagtg
     451  gcatgcgaca gttactggtg gacaatacgc ttcaaaggaa caagctctcg
     501  tgaagaagtt tattagagtt aataattatg ttgtttataa ccagcaagaa
     551  gctggcatgt atgagaatca tagtgagaat gcgttaatgt tgtatatggc
     601  gtgtactcat gcctctaatc cagtgtatgc tactttgaag atacggatct
     651  acttctatga ttccgtgaca aattaataaa tattgaattt tattgaagat
     701  gattggtcta catatacaat atgctctaat acattccata atacatgatc
     751  aactgcccta actacattat taatactgac aatccctaag ttatttaaat
     801  acttaagcac ttgggtctta aagaccctta agaaacgacc agtcggaggc
     851  tgtgaggtca tccagattcg gaaggctagg aaacatttgt gtatccccaa
     901  cgctttccgc aggttgtgat tgaactgtat ctggacagtg atgatgtcgt
     951  ggttcatgtt gagtggcctg ttgtggtgct ctgttatctt gaaatatagg
    1001  ggagtttgaa tctcccagat atacacgcca ttctctgctt gagctgcagt
    1051  gatggatccc cctgtgcgtg aatccatgga