Sequence of DPV Sida golden mosaic Florida virus
Sida golden mosaic Florida virus-Malvastrum strain Cuba:Havana:Malvastrum:111:2009 segment DNA-B, complete sequence.
ACC No: HM003778
Dated: 2010-09-28 | Length: 2578 | CRC: -1054462933
ID HM003778; SV 1; circular; genomic DNA; STD; VRL; 2578 BP.
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AC HM003778;
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DT 16-AUG-2010 (Rel. 105, Created)
DT 28-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE Sida golden mosaic Florida virus-Malvastrum strain
DE Cuba:Havana:Malvastrum:111:2009 segment DNA-B, complete sequence.
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KW .
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OS Sida golden mosaic Florida virus-Malvastrum
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2578
RX PUBMED; 20677027.
RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.;
RT "Complete nucleotide sequence of Sida golden mosaic Florida virus and
RT phylogenetic relationships with other begomoviruses infecting malvaceous
RT weeds in the Caribbean";
RL Arch. Virol. 155(9):1535-1537(2010).
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RN [2]
RP 1-2578
RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.;
RT ;
RL Submitted (15-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Departamento de Fruticultura Subtropical y Fitopatologia, Consejo Superior
RL de Investigaciones Cientificas, Estacion Experimental La Mayora,
RL Algarrobo-Costa, Malaga 29760, Espana
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CC GenBank Accession Numbers HM003778-HM003779 represent the complete
CC genome of Sida golden mosaic Florida virus-Malvastrum strain
CC Cuba:Havana:Malvastrum:111:2009.
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FH Key Location/Qualifiers
FH
FT source 1. .2578
FT /organism="Sida golden mosaic Florida virus-Malvastrum"
FT /segment="DNA-B"
FT /host="Malvastrum coromandelianum"
FT /strain="Cuba:Havana:Malvastrum:111:2009"
FT /isolate="111"
FT /mol_type="genomic DNA"
FT /country="Cuba:Havana"
FT /collected_by="E. Fiallo-Olive"
FT /collection_date="Sep-2009"
FT /clone="111H10"
FT /db_xref="taxon:871521"
FT gene 385. .1155
FT /gene="BV1"
FT CDS 385. .1155
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shutting protein"
FT /protein_id="ADL32227.1"
FT /translation="MYPFRSKRGYCFSHRRSTTRNFLFNRSTSIKRHDGKRRGGRFVKP
FT IDEPKMSAQSIHENQYGPDFVMAQNSAISTFISYPDMGKVEPSRSRSYIKLKRLRFKGT
FT VNIKRVQSDVNMDGSISKVEGVFSLIIVVDRKPHLGPSGCLHTFDELFGAMIHSHGNLS
FT IVPSLKDRYYIRHVFKRVLSVDNETLIVDVEGSTTLSNRRFNIWSSFKDVDRDSCKGVY
FT DNISKNALLIYYCWMSDMPSKASTYVSFDLDYVG"
FT gene complement(1217. .2098)
FT /gene="BC1"
FT CDS complement(1217. .2098)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /protein_id="ADL32228.1"
FT /translation="MNSQLAYPPSAFNYIESHRDEYQLCHDLTEIILQFPSTASQLTAR
FT LSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRIGSKCPIELGPGESWASRSTIGTAQSDVD
FT SEIENGLHPYRHLSRLGTSVLDPGESASIVGAQRAESNITMSLGQLNELVRTTVQECIN
FT NNCQASQAKSLK"
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SQ Sequence 2578 BP; 680 A; 517 C; 551 G; 830 T; 0 other;
hm003778 Length: 2578 28-SEP-2010 Type: N Check: 1453 ..
1 accggatggc cgcgctttgg tgcccgctcc ctctcacgcg cgctcccctg
51 gtgtggtgct gccactcgcc ctcttattgg tggttgtcct tcacgccccg
101 tctttttgac tggcctttaa ttcaaattaa aggataatgc tttctcgcgc
151 gatttgcttt tattttttga attattgtcg cgcgacgact gagtatggcc
201 cattgtgtca ggtgaaggac gtggctaaat tttgaccatg ctgctgggtc
251 tatttgcgtc taaatgtaaa cgaattattt atataaataa tttttcaagt
301 atgtcatgtt tagcctactc agattctaac cacgtttata ttgttggctg
351 taattgtgtt taatctgcct tttatcattt gataatgtat ccttttagaa
401 gtaaacgtgg ttattgcttt agtcatcgac gatctaccac acgtaacttt
451 ttgtttaacc gttcaacctc aattaagaga catgatggga aacgtcgagg
501 aggtcgattt gtaaagccca ttgatgaacc caaaatgtca gcccaatcca
551 tacatgaaaa tcagtatggg cctgattttg ttatggccca aaattcggct
601 atatctacgt ttatcagtta cccagacatg ggcaaggtag aacctagtcg
651 aagcagatcc tatatcaagt tgaaacgact ccgtttcaaa gggactgtga
701 atatcaaacg tgttcaatcg gatgtgaaca tggatgggtc tatctccaaa
751 gtggaaggag tgttctctct tattattgtt gtagatcgga aacctcactt
801 gggtcctagt ggttgtctgc atacattcga cgagctgttc ggagcaatga
851 ttcacagtca tggcaatctc agcattgtcc cttctctgaa agaccgttat
901 tatattcgcc atgtgttcaa acgtgtactg tccgttgata acgagacgct
951 gatagtagac gtggaaggat ccactaccct atctaatagg cgttttaata
1001 tttggtccag tttcaaggac gttgatcgtg attcatgcaa gggtgtttat
1051 gataacataa gcaagaacgc ccttttaatt tattattgct ggatgtcaga
1101 tatgccttca aaggcctcca cttatgtatc ttttgatctt gactatgttg
1151 gttaaatcaa taaaatttgt ttatccaaat ttgtttagct gtttatgata
1201 tagcaaaaga taacatttat ttcaacgact tggcctgaga agcctgacaa
1251 ttattattaa tacattcttg gactgttgtc ctaactaact cgttcaactg
1301 gcccaaagac attgtaatgt tggattccgc tctctgggct cccactattg
1351 aagcagactc tcctgggtcc agaacgctgg ttccaagcct gctcagatgt
1401 ctgtatgggt ggagtccgtt ttctatttcc gagtccacat ctgattgggc
1451 cgttcctatc gtacttctgg aagcccatga ttctccaggc ccaagctcaa
1501 ttggacattt agacccaatt ctagacatcg atgcacatct tatgggcttc
1551 ctctcccatt tcccatagtc cacatgcgaa aagtctacat ctttgtctgt
1601 gaactgtttt gacagtattt tgaccgtcgg tgcccggaag gggatatcta
1651 ctgagtgttt cgctgtggac aatttcagct tccctttaaa cttggcgaag
1701 tgggttcgct ggtgaacatt ggtatctgaa actctgtaat agagtttcca
1751 tggaatcggg tctttgagag agaagaatga agctgaaaaa tagtggagat
1801 ctatgttgca tctgatcgga aaagtccacg acgcctgcaa agactcattg
1851 tctgtcatcc tcttgtcatg gatctccaca attaccgtcc cagttgcgtt
1901 aattggaacc tgttgcctgt actctatgac acaatgatct atcttcatgc
1951 agctacggct gagtcttgcc gtcaactggg acgccgtcga tggaaattgc
2001 aagattatct cagttaggtc atggcagagc tgatattcgt ctctgtgaga
2051 ctctatgtaa ttgaaggcgc ttggaggata tgctaactga gaattcatct
2101 gaaaaataaa ggccgcgcag cggctttgca ggttgaatat gaaatgagta
2151 ctaaaaacct agggtttttg aatatgaaca acttatgaac tccgcgtgta
2201 cttgtatgaa ttttctgtga aacctagtga tataaatgag gaattggagg
2251 ataatcgctt aagttttcca gaaaattaag aacagtcgtt atacctttcc
2301 agaaattgaa agctttttga aaaatgggag aaatatgaag tgtaaataat
2351 tatgggaaat atgttagatg tgaaagagtt tatatagaca ttctcttttt
2401 tgttgattta tttgcagtct ttctatcaat ggcatttttg taataatgag
2451 agtgttcccc aattgagact ctctcaaact ttctcataca attggggaat
2501 ggggaacaat atatactaga accctcaata gaactttgga tctcgttcac
2551 acacgtggcg gccatccgct ataatatt