Sequence of DPV Tomato leaf curl Joydebpur virus
Tomato leaf curl Joydebpur virus-India [India/Ghazipur/Chilli/2007] clone pChGhB38 segment DNA-A, complete sequence.
ACC No: HM007098
Dated: 2012-04-11 | Length: 2760 | CRC: -1569013293
ID HM007098; SV 1; circular; genomic DNA; STD; VRL; 2760 BP.
XX
AC HM007098;
XX
DT 11-APR-2012 (Rel. 112, Created)
DT 11-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE Tomato leaf curl Joydebpur virus-India [India/Ghazipur/Chilli/2007] clone
DE pChGhB38 segment DNA-A, complete sequence.
XX
KW .
XX
OS Tomato leaf curl Joydebpur virus-India [India/Ghazipur/Chilli/2007]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2760
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
XX
RN [2]
RP 1-2760
RA Singh A.K., Yadav T., Chattopadhyay B., Chakraborty S.;
RT ;
RL Submitted (16-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2760
FT /organism="Tomato leaf curl Joydebpur virus-India
FT [India/Ghazipur/Chilli/2007]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/Ghazipur/Chilli/2007"
FT /mol_type="genomic DNA"
FT /country="India:Ghazipur"
FT /collection_date="Nov-2007"
FT /clone="pChGhB38"
FT /db_xref="taxon:1000676"
FT gene 145. .501
FT /gene="AV2"
FT CDS 145. .501
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76766.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQADEQ
FT EAQDVQDVQKPRCA"
FT gene 305. .1075
FT /gene="AV1"
FT CDS 305. .1075
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76767.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKFVYVLGKIWMDENIKTKNHTHSAMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(1072. .1476)
FT /gene="AC3"
FT CDS complement(1072. .1476)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76770.1"
FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKIIDHHHRPFLRNHDI
FT ITVQVRFNHNLRKALGIHQCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN
FT VIRAVDHVLWNVIAQTIYVQSSNIIKFNIY"
FT gene complement(1217. .1621)
FT /gene="AC2"
FT CDS complement(1217. .1621)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76769.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRPPPPAIPEEPRHHNSPSTVQSQP
FT EESVGDTPMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1524. .2609)
FT /gene="AC1"
FT CDS complement(1524. .2609)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76768.1"
FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLQNLETPTNKLFIR
FT ICRELHENGSPHLPCPRPIRRKIPVQKPDPSISHPQPGQHISIRTFRGAKSSTDVKTYM
FT EKDGDVLDHGIFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH
FT NLNTNLDRIFTPPLEVYVSPFCSSSFDRVPQELEEWAAENVVSAAARPLRPMSIVIEGD
FT SRTGKTMWARSLGPHNCLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFVTLEGPL
FT YSGSNQSAAQAGEEGDQASSS"
FT gene complement(2159. .2452)
FT /gene="AC4"
FT CDS complement(2159. .2452)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76771.1"
FT /translation="MGLLTCHVLVQFEGKFQCKNPILRSHIPNPVNTFPSEHSGELRAL
FT QMSKPTWRKTETCLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPSHRPSIF"
XX
SQ Sequence 2760 BP; 732 A; 575 C; 654 G; 799 T; 0 other;
hm007098 Length: 2760 11-APR-2012 Type: N Check: 3791 ..
1 accggatggc cgcgattttt tgaagtgggc cccacaacac acgtgctgac
51 aaggacaagt gaaccaatta gaaacgcccc tcaaagctta attattcaat
101 ggtcccctat ataaacttgg tccccaagta gtgcactctt tccaatgtgg
151 gatccattag taaacgagtt tcctgaaacc gttcacggtt ttaggtgtat
201 gctagccgtt aaatatctgc agctagtaga aaagacgtat tctccagaca
251 ctctcgggta cgatttaatc cgtgatttaa tttcagtcat cagggccaga
301 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga
351 aggtacgccg ccgtctcaac ttcgacagcc catataccag ccgtgctgct
401 gcccccattg tccgcgtcac caaagcaaaa gcatgggcca acaggccgat
451 gaacaggaag cccaggatgt acaggatgta cagaagccca gatgtgccta
501 gaggatgtga aggcccgtgt aaggtccagt cttttgagtc tagacatgat
551 gtccaacaca taggtaaagt catgtgtgtt agtgatgtta ctcgtggaac
601 tgggctgacc catcgagtgg gtaaaaggtt ttgtgttaag ttcgtctatg
651 ttctgggcaa gatttggatg gatgagaaca tcaagactaa gaatcacacg
701 catagcgcta tgtttttcct tgttagagat cgtaggcccg tagataagcc
751 ccaagacttt ggtgaggtat ttaacatgtt tgataatgag cccagtacgg
801 cgactgtgaa gaacgtgcat cgtgacaggt atcaggtgct gaggaagtgg
851 catgcaactg tgacaggtgg acaatatgca tcgaaggagc aagcgctcgt
901 gaagaagttt attagggtta acaattatgt cgtgtataac cagcaagaag
951 ctgggaaata tgaaaaccat tctgaaaatg cattgatgtt gtacatggcg
1001 tgtacccacg cctctaatcc tgtgtatgct actttgaaga tacggatcta
1051 tttctatgat tccgtaacaa attaataaat attgaatttt attatgtttg
1101 aactttgtac ataaattgtt tgcgctatta cattccataa tacatggtcg
1151 acagctctaa ttacattatt gatactaatt acagcaaaat tatttaaaaa
1201 ctgcaacact tgggtcctaa atacccttaa gaaatgacca gtccgaggct
1251 gtaaggtcgt ccagattcgg aaggttagaa aacattggtg tatccccaac
1301 gctttcctca ggttgtgatt gaaccgtact tggactgtta tgatgtcgtg
1351 gttcctcagg aatggccggt ggtggtggtc gattatcttg aaatacaggg
1401 gatttgttat ctcccagata aacacggaat tctctgcttg agctgcagtg
1451 atgggttccc ctgtgcgtga atccatatcc gtggcagcgt aatgctatga
1501 aatatgaaca gccgcagtct aggtcaactc gacgacgcct ggtccccctc
1551 ttcgccagcc tgtgctgcac tttgattgga acctgagtag agtgggcctt
1601 cgagggtgac gaaggtcgca ttctttaaag cccaattttt aagtgcgcta
1651 tttttctctt catccaagaa ctctttatag ctggagttgg gtcctggatt
1701 gcagaggaag atagcgggaa tgccgccttt aatttgaact ggctttccgt
1751 attttgtatt tgattgccag tccctttggg cccccatgaa ttccttaaag
1801 tgctttaggt agtgcgggtc gacgtcatca atgacgttat accaggcgtc
1851 attactatag acctttgggc taaggtcgag atgtccacac aaacagttgt
1901 gtggacctag tgacctggcc cacattgttt tgcccgttct actgtcgccc
1951 tctatcacta tactcatggg cctcaatggc cgcgcagcgg cactgacgac
2001 gttctcggca gcccactcct caagttcttg tggaactcga tcaaaagaag
2051 aagaacaaaa aggagaaaca taaacctcca acggaggtgt aaaaatccta
2101 tctaaattag tatttaaatt atgaaattgt aaaacataat ctttgggagc
2151 tttctccctt aaaatattga gggccgatga cttggaccct gaattgattg
2201 cctcggcata tgcgtcgttg gcagattggc aacctcctct agctgatctt
2251 ccatcgactt ggaaaattcc atgatcaagc acgtctccgt ctttctccat
2301 gtaggttttg acatctgtag agctcttagc tcccctgaat gttcggatgg
2351 aaatgtgttg accgggttgg ggatgtgaga tcgaaggatc gggtttttgc
2401 actggaattt tccttcgaat tggacgagga catggcaagt gaggagaccc
2451 attttcgtgt agttctctac agattctaat aaataattta ttggttgggg
2501 tttctaggtt ttgtaattgg gaaagtgcct cttctttggt gagagagcag
2551 tgtgggtatg tgaggaaata atttttggca ttgatcctga atttatttgg
2601 aggagccatt gacttggtca atcggtgtcc aacaaacttg gctatgcaat
2651 tggtgtctgg tgtcttattt atatgtggac accaatggca tatgtgtaat
2701 ttttgaaaat gactttaatt caaatttcaa aattcccaaa gcggccatcc
2751 gtctaatatt