Sequence of DPV Chilli leaf curl virus
Chilli leaf curl Multan virus-India [India/Guntur/2009] clone pChGuB16 segment DNA-A, complete sequence.
ACC No: HM007100
Dated: 2012-04-11 | Length: 2745 | CRC: 233568872
ID HM007100; SV 1; circular; genomic DNA; STD; VRL; 2745 BP.
XX
AC HM007100;
XX
DT 11-APR-2012 (Rel. 112, Created)
DT 11-APR-2012 (Rel. 112, Last updated, Version 1)
XX
DE Chilli leaf curl Multan virus-India [India/Guntur/2009] clone pChGuB16
DE segment DNA-A, complete sequence.
XX
KW .
XX
OS Chilli leaf curl Multan virus-India [India/Guntur/2009]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2745
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
XX
RN [2]
RP 1-2745
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT ;
RL Submitted (16-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2745
FT /organism="Chilli leaf curl Multan virus-India
FT [India/Guntur/2009]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/Guntur/Chilli/2009"
FT /mol_type="genomic DNA"
FT /country="India:Guntur"
FT /collection_date="Jan-2009"
FT /clone="pChGuB16"
FT /db_xref="taxon:1000666"
FT gene 149. .511
FT /gene="AV2"
FT CDS 149. .511
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76772.1"
FT /translation="MWDPLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLI
FT SVIRARNYVEATSRYNHFHSRLEGTPPSQLRQPICQPCCCPHCPRHKVKSMGQQAHESE
FT AQDVQDVQEPRCSKGM"
FT gene 306. .1076
FT /gene="AV1"
FT CDS 306. .1076
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76773.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKSRAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPNDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1073. .1477)
FT /gene="AC3"
FT CDS complement(1073. .1477)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76776.1"
FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFFRNRDI
FT INVQIRFNQNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLRVLNNFAVISINN
FT VIRAADHVLWNVLQHTVYVQQSYSIKFNLY"
FT gene complement(1218. .1622)
FT /gene="AC2"
FT CDS complement(1218. .1622)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76775.1"
FT /translation="MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAILPEPRHHQRADTVQSKP
FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI"
FT gene complement(1525. .2610)
FT /gene="AC1"
FT CDS complement(1525. .2610)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76774.1"
FT /translation="MPRAGRFNINAKNYFLTYPNCSLSKEEALSQLQNLETPVNKLYIR
FT VCRELHENGEPHLHVLLQFEGKYQCTNNRFFDLISSSRSAHFHPNIQRAKSSSDVKAYV
FT EKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH
FT NLNANLDRIFTPPLEVYVSPFCSSSFDQVPGELEVWAAENVVSAAARPLRPMSIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFFTLAGPL
FT YSGSNQSAAQAGQEGDQASSR"
FT gene complement(2160. .2453)
FT /gene="AC4"
FT CDS complement(2160. .2453)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76777.1"
FT /translation="MGNLIYTCSSNSRENINAQTTDSSTSFPHPGQHISIRTFRELRAL
FT QMSKPTWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF"
XX
SQ Sequence 2745 BP; 754 A; 580 C; 630 G; 781 T; 0 other;
hm007100 Length: 2745 11-APR-2012 Type: N Check: 6621 ..
1 accggatggc cgcgattttt tttaccatgg tccccaccac acgcactaac
51 ggacaaatac acgtggacca atgaaattgg ctcctcgttg cttaattatt
101 gaatggtcct ctatataaac ttggtcccca agtagtgcac acctaccaat
151 gtgggatcca ttaaacgagt tccctgaaac cgttcacggt tttaggtgta
201 tgttagccgt taaatatctg cagttagtag aaaatacgta ttctccagat
251 actctggggt acgatttaat cagggattta atttcagtta ttagggctag
301 aaattatgtc gaagcgacca gcagatataa tcatttccac tcccgcctcg
351 aaggtacgcc gccgtctcaa cttcgacagc ccatatgcca gccgtgctgc
401 tgcccccatt gtccgcgtca caaagtcaag agcatgggcc aacaggccca
451 tgaatcggaa gcccaggatg tacaggatgt acaggagccc agatgttcca
501 aggggatgtg aaggcccatg taaggtccag tcgtttgagt ctagacacga
551 tgtagttcat ataggcaagg tcatgtgtat tagtgatgtt acccgtggta
601 ctgggttaac ccatagagta ggtaagcgct tctgtgttaa gtctgtgtat
651 gtattaggga agatatggat ggatgagaat atcaagacta agaatcacac
701 gaatagtgtg atgttcttcc ttgtacgtga tcgtcgtcca aatgataaac
751 cacaagattt tggagaggtg ttcaacatgt ttgacaacga gcctagtact
801 gcaactgtga agaatatgca tagggatcgt tatcaggttt tgaggaaatg
851 gcacgcaacg gttaccggtg gacagtatgc ttcgaaggaa caggcattag
901 ttaagaagtt cgttagggtt aacaattatg ttgtgtataa ccagcaggaa
951 gctgggaaat atgaaaatca cacagagaat gctctgatgt tgtacatggc
1001 atgtacccat gcctctaacc ctgtgtatgc tactttgaag atacggatct
1051 atttctacga ttcagtatcg aattaataaa gattgaattt tattgaatac
1101 gactgttgta catatacagt gtgttgtaat acattccata atacatgatc
1151 agctgcccta attacattat ttatggaaat tacagcaaaa ttatttaaaa
1201 cacgcaacac ttgggtccta aataccctta agaaatgacc agtccgaggc
1251 tgtaaggtcg tccagattcg gaaggttaga aaacatttgt gtatccccaa
1301 cgctttcctc aggttttgat tgaaccgtat ctgcacgttg atgatgtctc
1351 ggttccggaa gaatggcctg ttgtggtgct cggttatctt gaaatacagg
1401 ggatttgtta tctcccagat aaacacgcca ttctctgctt gagctgcagt
1451 gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg
1501 aaataggagc agccgcaatc taggtcaacg cgacgacgcc tggtcccctt
1551 cttggccagc ctgtgctgca ctttgattgg aacctgagta gagtgggcct
1601 gcgagggtga agaaggtcgc attttttaaa gcccaatgtt tgagtgcgga
1651 attcttctcc tcatccaaga actctttata gctggaattg ggtcctggat
1701 tgcagaggaa gatagcggga attccacctt taatttgaac tggctttccg
1751 tatttcgtat ttgattgcca gtccctttgg gcccccatga attctttaaa
1801 gtgttttaga taatgcggat caacgtcatc aatgacgtta taccacgcat
1851 cattgctgta caccttaggg ctaaggtcta ggtgaccaca taggtagtta
1901 tgtggaccca atgacctagc ccacatggtc ttccctgtac gactatcacc
1951 ctctagcaca atactcatgg gtctcaaagg ccgcgcagcg gcactcacca
2001 cattctcggc agcccagact tcaagttctc caggaacttg atcaaaagaa
2051 gaagaacaaa aaggagaaac ataaacctcc aacggaggtg taaaaatcct
2101 atctaaatta gcatttaaat tgtgaaattg taaaacataa tctttgggag
2151 ccttttccct taaaatattg agggccgaag acttggaccc tgaattgatt
2201 gcctcggcat atgcgtcgtt ggcagattgg caacctcctc tagctgatct
2251 gccatcgatc tggaaaactc caaagtcaat gaagtctccg tctttctcca
2301 cgtaggcttt gacatctgaa gagctcttag ctctctgaat gttcggatgg
2351 aaatgtgctg accgggatga ggaaatgagg tcgaagaatc tgttgtttgt
2401 gcattgatat tttccctcga attggaggag cacgtgtaga tgaggttccc
2451 cattctcgtg caattctctg caaaccctaa tatataattt attaactgga
2501 gtttctaagt tttgtaattg ggaaagggcc tcttctttac taagagagca
2551 attgggataa gttaggaaat aattttttgc atttatattg aatctgccag
2601 cacgaggcat tttggtggac actctaattc tctgtatatc ggtggaatgg
2651 gggaccttat atatggtgtc caccaatggc aacttgtaat taccatgtaa
2701 gttccaatca atttcccgcc aatcgcggcc atccgcatta atatt