Sequence of DPV Chilli leaf curl virus
Chilli leaf curl virus-India [India/Pataudi/2007] clone pChPataB9 segment DNA-A, complete sequence.
ACC No: HM007116
Dated: 2012-04-11 | Length: 2763 | CRC: 661342190
ID HM007116; SV 1; circular; genomic DNA; STD; VRL; 2763 BP.
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AC HM007116;
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DT 11-APR-2012 (Rel. 112, Created)
DT 11-APR-2012 (Rel. 112, Last updated, Version 1)
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DE Chilli leaf curl virus-India [India/Pataudi/2007] clone pChPataB9 segment
DE DNA-A, complete sequence.
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KW .
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OS Chilli leaf curl virus-India [India/Pataudi/2007]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2763
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT "Molecular diversity of begomoviruses causing leaf curl disease of chillies
RT in India";
RL Unpublished.
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RN [2]
RP 1-2763
RA Singh A.K., Chattopadhyay B., Chakraborty S.;
RT ;
RL Submitted (17-MAR-2010) to the INSDC.
RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru
RL University, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2763
FT /organism="Chilli leaf curl virus-India
FT [India/Pataudi/2007]"
FT /segment="DNA-A"
FT /host="chilli"
FT /isolate="India/Pataudi/Chilli/2007"
FT /mol_type="genomic DNA"
FT /country="India:Pataudi"
FT /collection_date="Feb-2007"
FT /clone="pChPataB9"
FT /db_xref="taxon:1000669"
FT gene 147. .503
FT /gene="AV2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /note="suppressor of RNAi"
FT /protein_id="AEA76832.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLLENTYAPDTLGYDLIRDL
FT ISVIRAKNYVQATSRYNHFHARLEGTPPSQLRQPLCQPCCCPHCPRHKGQSMGEQAHEQ
FT EAQDVQDVQKPRCS"
FT gene 307. .1077
FT /gene="AV1"
FT CDS 307. .1077
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="nucleoprotein; responsible for encapsidation of
FT viral DNA and insect transmission"
FT /protein_id="AEA76833.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPTVRVTKARAWV
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN"
FT gene complement(1074. .1478)
FT /gene="AC3"
FT CDS complement(1074. .1478)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn"
FT /note="replicational enhancer protein; enhances viral
FT replication"
FT /protein_id="AEA76836.1"
FT /translation="MDSRTGEPITAAQAENSVFIWEITNPLYFKITEHHNRPFLRNHDI
FT ITVQIRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVYKYLNNFAVISINN
FT VLRAVNHVLWNVLAQTIHVQSSNIIKFNLY"
FT gene complement(1219. .1623)
FT /gene="AC2"
FT CDS complement(1219. .1623)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP"
FT /note="transcriptional activator protein; transactivates
FT virion sense ORFs and suppressor of RNAi"
FT /protein_id="AEA76835.1"
FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR
FT CHGYGFTHRGTHHCSSSREFRLYLGDNKSPVFQDNRAPQPAIPEEPRHHHRADTVQSQP
FT EESVGDTQMFSDLPNLDDITASDWSFLKGI"
FT gene complement(1526. .2611)
FT /gene="AC1"
FT CDS complement(1526. .2611)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep"
FT /note="replicase; responsible for viral replication"
FT /protein_id="AEA76834.1"
FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLSTPTNKLFIR
FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV
FT EKNGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH
FT NLSTNLDRIFTPPLEVYVSPFCSSSFDQVPEELEEWVAENVLGAAARPLRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL
FT YSGSNQSAAQAGQEGDQASSS"
FT gene complement(2161. .2460)
FT /gene="AC4"
FT CDS complement(2161. .2460)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /note="involved in symptom expression and suppressor of
FT RNAi"
FT /protein_id="AEA76837.1"
FT /translation="MKMGNLISTSSYNSKVNSNAKTTDSSTSFPQPGQHISIRTFRELK
FT ARQMSRPMWKKTETSLILEFSKSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY"
XX
SQ Sequence 2763 BP; 743 A; 564 C; 647 G; 809 T; 0 other;
hm007116 Length: 2763 11-APR-2012 Type: N Check: 7528 ..
1 accggatggc cgcgattttt tttaccgtgg gccccaccac gcacgtgctg
51 acaaagacat gtgcaccaat taaaatcgtc cctcatagct taattatttc
101 atggtccccc ctataaactt gggctccaag tagtgcactc tttccaatgt
151 gggatccatt agtaaacgag tttcctgaaa ccgttcacgg ttttaggtgt
201 atgttagcag ttaaatatct gcagctacta gaaaatacat atgctccaga
251 cactctgggg tacgatttaa tcagggattt gatctccgtt attagggcta
301 agaattatgt ccaagcgacc agcagatata atcatttcca cgcccgcctc
351 gaaggtacgc cgccgtctca acttcgacag cccttatgcc agccgtgctg
401 ctgcccccac tgtccgcgtc acaaaggcca gagcatgggt gaacaggccc
451 atgaacagga agcccaggat gtacaggatg tacagaagcc cagatgttcc
501 taggggttgt gaaggcccat gtaaggtcca gtcttttgag tctagacacg
551 atgtagttca tatagggaag gttatgtgta ttagtgatgt tacccgtggt
601 acggggttaa cccatagagt aggtaagcgt ttctgtgtta agtctgtgta
651 tgtattaggg aagatatgga tggatgagaa tatcaagact aagaatcaca
701 cgaatagtgt gatgtttttc ctggtccgtg atcgtcgtcc tgttgataaa
751 ccacaagatt ttggagaggt gttcaacatg tttgacaacg agcccagcac
801 tgccactgtg aagaatatgc atagagatcg ttatcaggtc ttgaggaaat
851 ggcacgcaac ggttaccggt ggacagtacg cgtcgaagga acaggcatta
901 gttaagaagt tcgttagggt taataattat gttgtgtata accagcagga
951 agctggtaaa tatgagaatc atactgagaa tgcattgatg ttgtacatgg
1001 cgtgtactca cgcctctaat cctgtgtatg ctaccttaaa gatacggatc
1051 tatttctatg attcagtatc gaattaataa agattaaatt ttattatatt
1101 tgaactttgt acatgaattg tttgtgctaa tacattccat aatacatggt
1151 tgacagctct aagtacattg tttatactaa ttacagcaaa attatttaaa
1201 tacttataca cttgggtcct aaataccctt aagaaatgac cagtctgagg
1251 ctgtaatgtc gtccagattc ggaaggtcag aaaacatttg tgtatcccca
1301 acgctttcct caggttgtga ttgaaccgta tctgcacggt gatgatgtcg
1351 tggttcctca ggaatggccg gttgtggtgc tctgttatct tgaaatacag
1401 gggatttgtt atctcccaga taaagacgga attctctgct tgagctgcag
1451 tgatgggttc ccctgtgcgt gaatccatag ccgtggcagc gtaatgcgat
1501 gaaatatgaa caaccgcagt ctaggtcaac tcgacgacgc ctggtcccct
1551 tcttggccag cctgtgctgc actttgattg gaacctgagt agagtgggcc
1601 ttcgagggtg atgaaggtcg cattctttaa agcccaattt tttagtgcgc
1651 tatttttctc ttcatccaag aactctttat agctggaatt gggtcctgga
1701 ttgcagagga agatagcggg aattccacct ttaatttgaa ctggctttcc
1751 gtattttgtg ttggattgcc agtccctttg ggcccccatg aattctttaa
1801 agtgctttag gtagtgggga tcgacgtcat caatgacgtt gtaccaggcg
1851 tcattactgt agacctttgg gctaaggtcg agatgtccac acaaatagtt
1901 gtgtggacct aatgacctgg cccacatagt cttccccgtc ctactatcac
1951 cctctatgac aatacttatg ggtcttaacg gccgcgcagc ggcaccgaga
2001 acattctcgg cgacccattc ctcaagttcc tcaggaactt gatcaaaaga
2051 agaagaacaa aaaggagaaa cataaacctc caagggaggt gtaaaaatcc
2101 tatctaaatt agtacttaga ttatgaaatt gtaatacaaa atctttggga
2151 gctttctccc ttaatatatt gagggccgca gctttggacc ctgaattgat
2201 tgcctcggca tatgcgtcgt tggcagactg ctgacctcct ctagctgatc
2251 ttccatcgac ttggaaaact ccaaaatcaa tgaagtctcc gtttttttcc
2301 acataggcct tgacatctga cgagctttta gctccctgaa tgttcggatg
2351 gaaatgtgct ggcctggttg gggaaacgag gtcgaagaat ctgttgtttt
2401 ggcatttgaa tttaccttcg aattgtatga ggacgtggag atgaggttcc
2451 ccattttcat gtaattcgcg agaaaccctg atgaacaatt tattagtggg
2501 ggtgcttagg ttttgaagtt gggaaagtgc ttcttcttta gtgagggaac
2551 actgtggata tgttaagaaa taatttttag catatatttg aaaacgtttt
2601 ggaggagcca tgttgacttg gtcaatcggt actcaacaaa cttggctatg
2651 caatcggtga atggtactca atatatagtg tgagtaccaa atggcatgtt
2701 cgtaattttg aaagcaaatt caaaattcaa attccgacaa aagcggccat
2751 ccgcactaat att