Sequence of DPV Rockport virus
Rockport virus isolate MSB57412 segment M, complete sequence.
ACC No: HM015219
Dated: 2011-07-26 | Length: 3647 | CRC: -1675930432
ID HM015219; SV 1; linear; viral cRNA; STD; VRL; 3647 BP.
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AC HM015219;
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DT 26-JUL-2011 (Rel. 109, Created)
DT 26-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Rockport virus isolate MSB57412 segment M, complete sequence.
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KW .
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OS Rockport virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
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RN [1]
RP 1-3647
RX DOI; 10.1128/JVI.02450-10.
RX PUBMED; 21632770.
RA Kang H.J., Bennett S.N., Hope A.G., Cook J.A., Yanagihara R.;
RT "Shared Ancestry between a Newfound Mole-Borne Hantavirus and Hantaviruses
RT Harbored by Cricetid Rodents";
RL J. Virol. 85(15):7496-7503(2011).
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RN [2]
RP 1-3647
RA Kang H.J., Bennet S.N., Hope A.G., Song J.-W., Cook J.A., Yanagihara R.;
RT ;
RL Submitted (19-MAR-2010) to the INSDC.
RL Tropical Medicine and Medical Microbiology and Pediatrics, John A. Burns
RL School of Medicine, University of Hawai`i at Manoa, 651 Ilalo, Honolulu, HI
RL 96813, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3647
FT /organism="Rockport virus"
FT /segment="M"
FT /host="Scalopus aquaticus"
FT /isolate="MSB57412"
FT /mol_type="viral cRNA"
FT /country="USA"
FT /collection_date="Oct-1986"
FT /db_xref="taxon:1001080"
FT CDS 58. .3468
FT /codon_start=1
FT /product="glycoprotein"
FT /protein_id="AEA11485.1"
FT /translation="MYTLYLLLYFYQVIIISSRNLIELKLQCPHASHAQHNFVVGYTEL
FT VPVSITKVTSMSVDSSCNFDLQQNPNVIQKVTKWTWAKKSSTTGQTNADSTTYQSETTE
FT ASLKGICANLILDIHNHISKKTIACYDLSCNQTHCQPTLYVISPNSVCMDVRNCIIGVG
FT DQKIMVVFEKTYCITGLLIEGICFNPLQTLLTGYASQSYSVITVPVTCFLHPKKTNSNP
FT MKLATELEKLRGKTDCSTNNFQGYYICFLGGYSEPLLLPKSEDHRSAEILSKIVIHYHG
FT EDHDIKSYEFSSFRIIGSLTGKVPHTESSDNVQGISYSGPPLYTSLGVLAAKDTPNYVW
FT TNGIIFNSNHSTCEKKVLPITWTGYVTLPGKIEKTSSCNIFCTLAGPGADCEAYSEMGI
FT FNLSSTTCLINRMHRFRGAEQQIKFLCQRIDSDIVVYCNGQRKIITTKTLVIGQCIYTF
FT TSIFSIIPSVAHSLAVELCVPGLHGWATVMLVMTFCFGWLLIPTFTFIILRFLYILTYG
FT CSRYNSEAKFKAVLEKVKVEYQKTMGSMVCDICHYECEIAKELDSHKKSCVNGHCPYCM
FT NATEATETALQSHFKVCKLTSRFQENLKKSLVPSEQRKGCYRTLVVFRYKSRCYVGLTW
FT CLLLLIELIIWAASAEPVLKERGWTDTAHGVGIIPLKSDLELDFSLYSSATFTYKRQLQ
FT NPANTEEIVPFQFDVDSQVIHAEIQPLGHWMDGKLNLKTAFHCYGACAKYTYPWQTSHC
FT FFEKDYQYETGWGCNPSDCPGVGTGCTACGIYIDKLKPVARAYRIISLSYSRKICVQLG
FT TETTCKVISANDCLVSNNIKVCIIGTVTKFSAGDTIVFLGPFESGGIIFKQWCTTTCNF
FT GDPGDIMSNADGIKCPEHNGSFRKKCAFATTPLCEYTGNTISGYKRMLATKDSFQSFNL
FT TSVHDTVNSLEWIDPDSSLKDHLNLILNRDLSFQDLTDNPCKVDIVTLSVDGAWGSGIG
FT FTLQCAVSLTECSTFMTSIKACDMAMCYGSSSVTLSRGQNTVKVTGKGGHSGSSFKCCH
FT NEKCSEKGLIAAAPHLDRVSGVGELSSNKVFDDGAPQCGIKCWFVKSGEWLYGILNGNW
FT IVFLVLFVILLLSLFLFSVFCPVRKHKSN"
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SQ Sequence 3647 BP; 1217 A; 586 C; 693 G; 1151 T; 0 other;
hm015219 Length: 3647 26-JUL-2011 Type: N Check: 6649 ..
1 tagtagtaga ctccgcacga agaagcaaaa cattgacgaa gagaatatac
51 aggcaaaatg tatactcttt atttactgtt atatttttat caggtgatta
101 tcataagctc taggaattta atagagttaa aattacagtg tcctcatgct
151 tctcatgcac agcataactt tgttgtaggt tatacagaac tagtacctgt
201 gtcgataaca aaggtaactt cgatgtctgt tgatagttcg tgtaactttg
251 atttacagca aaatccaaat gtcattcaaa aagttacaaa atggacttgg
301 gcaaaaaaat catcaactac tggacaaaca aatgctgatt caaccacata
351 tcaatctgag acaactgaag cttcactaaa gggaatctgt gccaacctaa
401 tactagatat acataaccac atatctaaga agacaatagc atgttatgac
451 ctatcatgca accaaacaca ttgccaacca acactctatg ttatatcacc
501 aaattctgtt tgtatggatg taagaaattg tattatagga gtaggagatc
551 agaagatcat ggtggtattt gaaaaaacat actgcattac tggtttactt
601 attgaaggca tttgttttaa cccactgcaa acactattaa ctggttatgc
651 ttcacaaagc tatagtgtaa taacagttcc ggtcacatgt tttttacatc
701 ccaaaaaaac aaacagtaac ccaatgaaac ttgctacaga attagaaaag
751 ttaagaggca aaacagattg tagcacgaac aattttcaag gatattacat
801 ttgttttcta ggtggttatt cagaaccttt actcttacct aaaagtgaag
851 atcatagatc ggctgagatt ttaagtaaga ttgtgattca ttatcatggt
901 gaagatcatg acattaagag ttatgaattt agcagcttta gaataattgg
951 aagtttgact ggcaaagtac cccatacaga atcatcggat aatgtccaag
1001 gtataagtta ttcaggacca ccattatata cttcattagg cgttcttgca
1051 gcaaaagata caccaaatta tgtatggaca aatggtatta tctttaattc
1101 aaatcattct acatgtgaga agaaagtact tcctataaca tggacgggtt
1151 atgtgacttt accaggaaaa atcgagaaaa cgtctagttg taacattttc
1201 tgcacattag caggaccagg agctgattgt gaagcttatt ctgaaatggg
1251 catattcaac ttaagctcaa ctacatgttt aattaataga atgcatagat
1301 ttaggggggc agagcaacaa attaaattct tgtgtcaacg tattgattca
1351 gatattgttg tgtattgtaa tggtcagcgg aaaatcataa ctacaaagac
1401 tttggtaata ggtcagtgta tatatacatt tacaagtatt ttttcaatta
1451 tcccatcagt tgcacactcg ctggctgtag agttatgtgt gccaggtctt
1501 catggttggg caaccgtcat gcttgttatg acattttgtt ttggatggct
1551 cttaatacca acatttacat ttatcatatt acggttttta tatattttaa
1601 catatggctg ttcaagatac aactctgaag cgaaatttaa agctgtgtta
1651 gaaaaagtca aagttgaata tcaaaaaaca atgggttcaa tggtatgtga
1701 tatatgtcat tatgagtgtg aaattgcaaa agaactagac tcccataaaa
1751 agagctgtgt gaatggtcat tgcccttact gtatgaatgc tactgaagca
1801 actgaaacag cacttcaaag tcatttcaaa gtttgcaaac taacatctag
1851 gttccaggaa aatttaaaaa aatcacttgt tccatcagaa cagagaaaag
1901 gatgttatag aacattggta gtttttcgat ataagagccg atgttatgta
1951 ggtctaacct ggtgtttatt gttactcata gaattaatca tttgggctgc
2001 aagtgctgaa ccagtattga aagaaagggg ctggactgat actgcacatg
2051 gagtgggcat tataccgttg aagtctgatt tagaacttga cttctcatta
2101 tactcatctg ctacttttac ttataaaagg caacttcaaa atccagccaa
2151 tacagaagaa attgtaccct tccagtttga tgttgattcc caagtaattc
2201 acgctgaaat tcaaccattg ggtcactgga tggatggaaa attaaattta
2251 aaaactgcat tccattgtta tggagcttgc gcaaagtaca catatccatg
2301 gcagactagt cattgtttct ttgaaaaaga ttatcaatat gaaactggat
2351 ggggatgtaa cccaagtgat tgcccaggag ttggtacagg ttgtacagca
2401 tgtggcattt atattgataa attaaagcct gtggcaaggg catatagaat
2451 tatttctttg tcttacagca gaaagatttg tgtgcaatta gggacagaaa
2501 caacatgtaa agttataagt gctaatgact gtttggtgag taataatatc
2551 aaggtttgca taataggaac tgtaactaag ttttctgcag gggatactat
2601 tgtattttta ggcccatttg aaagtggagg aattatattt aaacaatggt
2651 gcactactac atgcaatttt ggagaccctg gagacatcat gtcaaatgca
2701 gatggtataa aatgtccaga gcataatggt tcattcagaa agaaatgtgc
2751 atttgcaacg accccactgt gtgagtatac aggaaacact atctctgggt
2801 ataaaagaat gctggcaaca aaagattcct ttcaatcatt caacttaact
2851 tcagtacatg atacagttaa tagtctagaa tggatagacc cagacagttc
2901 attaaaagac catttaaatc taattttaaa tcgggattta tcattccaag
2951 acttaacaga caatccatgc aaggttgata ttgttacttt atcagtagat
3001 ggtgcatggg gttcaggaat tggtttcaca ctacaatgtg ctgtaagttt
3051 gactgaatgt agcacattta tgacatctat taaagcatgt gatatggcga
3101 tgtgttatgg gtcaagttca gttacgttat ctcgtggcca gaacactgta
3151 aaagttacag gaaaaggtgg tcattctgga tcgtcattta aatgctgtca
3201 taatgaaaaa tgttctgaaa aaggcctaat tgcggctgca cctcatttag
3251 atcgagtctc cggtgtaggt gaattgagtt ctaataaggt ttttgacgat
3301 ggtgcaccac aatgtggaat aaagtgttgg tttgttaaat ctggagaatg
3351 gttgtatggt atcctaaatg gaaattggat agttttccta gtcttgtttg
3401 tgattttgtt attgtcatta tttctcttta gtgtgttttg cccggtaaga
3451 aagcataaat caaattgaat tataaactaa tgctttaata tttgctttac
3501 ataaatctaa cccatgatca ttactaattc tcatactata ttaagtactg
3551 acactaatcc ttattaacaa aaaaaactaa cactttatga catctttact
3601 taacaccagc tttatctggg cttttgttcc tgcggagcct actacta