Sequence of DPV Rockport virus
Rockport virus isolate MSB57412 segment L, complete sequence.
ACC No: HM015221
Dated: 2011-07-26 | Length: 6558 | CRC: 1434151679
ID HM015221; SV 1; linear; viral cRNA; STD; VRL; 6558 BP.
XX
AC HM015221;
XX
DT 26-JUL-2011 (Rel. 109, Created)
DT 26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE Rockport virus isolate MSB57412 segment L, complete sequence.
XX
KW .
XX
OS Rockport virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6558
RX DOI; 10.1128/JVI.02450-10.
RX PUBMED; 21632770.
RA Kang H.J., Bennett S.N., Hope A.G., Cook J.A., Yanagihara R.;
RT "Shared Ancestry between a Newfound Mole-Borne Hantavirus and Hantaviruses
RT Harbored by Cricetid Rodents";
RL J. Virol. 85(15):7496-7503(2011).
XX
RN [2]
RP 1-6558
RA Kang H.J., Bennet S.N., Hope A.G., Song J.-W., Cook J.A., Yanagihara R.;
RT ;
RL Submitted (19-MAR-2010) to the INSDC.
RL Tropical Medicine and Medical Microbiology and Pediatrics, John A. Burns
RL School of Medicine, University of Hawai`i at Manoa, 651 Ilalo, Honolulu, HI
RL 96813, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6558
FT /organism="Rockport virus"
FT /segment="L"
FT /host="Scalopus aquaticus"
FT /isolate="MSB57412"
FT /mol_type="viral cRNA"
FT /country="USA"
FT /collection_date="Oct-1986"
FT /db_xref="taxon:1001080"
FT CDS 44. .6505
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AEA11487.1"
FT /translation="MDRYREIHQIIKDKIPGEVSAVECLDLLDRLYAVRHDLVDQMIKH
FT DWSDNKDRECPISQVLLMAGIPNETLNSMEKKIIPGSPSGQILKSFFKMTPDNYKITAN
FT LIEFIEVTVTTDIARGIREKKQKYLPGLEFIEQLLAQETKRGNIKENYKIKFDVVAVKT
FT DGSNISTQWPSQRNPGVVQNMRLVQADITFVREHLIKIDERPTLEAMFNLKFHVNVSKT
FT RTFHIPNYRPQMLYHPNIDNLVNHCREWLTTEHDFVFKEVKGMSVYSTFQKYESQHMHK
FT YNSSKKPRNFLLIQCTIQGPVLESTIASDQCDTRIGLLEVLKLEPLTPTQYLVVDMAHR
FT YVNLDRDDIMNFYSSKSHFNSTKNIKEPGTFKLNMSSLSVQSKSLLEKVGKKGDHKGVF
FT GTVIDSIDISSQLQINECSRNIESILSQLEMNIGETNTRLAAPAKTTGVDNLLSKFYEN
FT EMGKFLLTIIRKTVAWHIGHLIRDITERFNCSFLGLKDQKYWSIHAYDHGGVILFILPS
FT KSLEVVGSYIRYIIVFKKGIGLVDEENLDSSLDIDGVTWYVTKVISLDLNRLLALNISF
FT EKALLATATWFQYYTEDQGHFPLQHAIRSVYAFHFLLSVCQKMKLCAIFDNLRYLIPSV
FT TALYSGFELLIEKFFERPFKTCLEVYIYNIVKSLLISLAQNNKVRFYSKVRLLGLTVDQ
FT SSVGASGVYPSLMARVVYKHYRSLISEATTCFFLFEKGLHGNLTEEAKIHLETVEWANK
FT FVEKEKKFGKSKLENGYNIAEIGGLIKVEQQLYCQEVVELAAQELNSYLHAKSQVLATN
FT ILNKHWDKPYFSQTRNISLKGMSGSLQEDGHLASSVTLIEAIRYLNNSQINPTLIDLYE
FT QTKDQPAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIAKVVPEEYISYGGE
FT RKILNIQTALEKALRWASGESEIIQANGDTIKLKRKLMYVSADATKWSPGDNSAKFRCF
FT TQALYDGLTDDRLKNCVVDALRNIYETEFYMSRKLHRYIDDMDVLSDNVKGFLEFFESK
FT ASSKIRGNWLQGNLNKCSSLFGVAVSLLFKHVWQKLFPDLDCFFEFAHHSDDALFIYGY
FT LEPLDDGSAWFKYVSQQIQAGGLHWHSVNNEMWKSMFNLHEYILLMGSIRVSPKKTTVS
FT PTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGFFDDLAAAQSRCVKAMDLGASPQL
FT AQLAIVLCTSKVERLYGTAVGMVNNPTSYLKVPRNQVPIPLGGDGSMSIMELATAGIGM
FT ADKNILKKSYQSFLHTKRDNDRYVLGLFKFLMGLSNEVFQHEKLGEFSFIGKVQWKVFT
FT PKSKFEFYDQFSQTYIQNWTSQHPAYDYIIPRSRDNLLVYLVRKLNDPSIVTAMTMQSP
FT LQLRFRMQAKQHMKVCRLEGQWVTFREVLAAADSFASTYNPTKDDMDLFQTLVNCTFSK
FT EYAWKDFLNEVRCEVVTSRQIHRSKVARTFTVRERDQEIQNPITAVIGYKYAQTVEEIS
FT DVLDTAIFPDSLSADLQTMKEGVYRELGLDIGIPEVLKRIAPLLYKAGKSRVVIVQGNV
FT EGTAESICSYWVKSMSLVKTIKVQPKKEVLKATSLYAAKDNVGFQVDLAASRLCIEVWR
FT WCKANEQNVIEWLQALFFEKQTLMDWINRFRQKGVVPVEPEIQCLGLLLYDVLGVKSLL
FT QTQANRRAYSGKQYDAYCVQNYNEEKKIYEGDLRVTFNFGLDCARLEIFWDKQEYILET
FT SVTQKHVLKIMMEEVTKELLRCGMRFKTEHVTSTRSLVLFKTESGFEWGKPNVPCIVYK
FT NCALRTGLRTKNTVNKEFLITTQANGFRAIAQFDEDSPRFLLAHAYHSLKDVRYQAVTA
FT VGNVWFRLQNNKLFLNPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNEL
FT LQNINPKNTLNLDGIEDTSEGYTTVTTLSSRNWSEEMSIVSEDGIDDQESYTIDLDDID
FT FEDVNLEEDIEHFLQDESAYTGDLLIQTEDTDIKKIRGVIRILDPIRLIKSWVSKGLAI
FT DKVYNPVGIILMTRYMSKTFEFNKIPLSLLNPYDLTEFESVVKGWGECISGRFEEIDEE
FT AHRYVENRNLQPEDVLPDSLFSFHYVDILLRRLFPKDSSSSFY"
XX
SQ Sequence 6558 BP; 2339 A; 987 C; 1315 G; 1917 T; 0 other;
hm015221 Length: 6558 26-JUL-2011 Type: N Check: 2284 ..
1 tagtagtagg acttccgaga tagagaaaga tcaatcaaaa aaaatggata
51 ggtataggga aatacatcaa ataattaaag ataaaatacc aggagaggtt
101 tcagcagtag aatgtcttga tttgctagat aggctttatg cagttagaca
151 tgatttagta gatcagatga taaagcatga ttggtcagac aataaagaca
201 gagaatgtcc catatcacaa gtgctcttga tggcaggcat tcctaatgag
251 acattaaact ccatggaaaa gaaaataata ccaggtagtc caagtggaca
301 aatattgaag agttttttta agatgacccc agacaactat aaaattacag
351 caaatttgat tgagtttata gaagttacag ttacaacaga catagctcgt
401 ggaattagag aaaagaaaca aaaatactta ccaggtttag aattcataga
451 gcaattgtta gctcaagaga caaagagagg taatataaaa gaaaactata
501 agataaaatt cgatgttgtg gcagtcaaaa ctgatgggtc taatatctca
551 acacaatggc ctagtcagag gaaccctgga gtagtgcaga acatgcgtct
601 agtgcaagca gacattacat ttgtgcgtga acatctgata aagatagatg
651 aaagaccgac actagaagca atgtttaatt taaaatttca tgtgaatgta
701 tcaaaaacga gaacatttca tataccaaat tacaggcctc agatgttgta
751 ccaccctaat attgataatt tggttaacca ctgtagagaa tggttaacaa
801 cagagcatga ctttgtgttt aaggaagtca aaggcatgtc tgtatatagt
851 acatttcaga aatatgaatc acaacacatg cataaatata attcctcaaa
901 aaaaccaagg aactttcttc ttatacagtg cacaattcaa ggacctgtgc
951 tcgagtcaac aatagcctct gatcaatgtg atacgcggat tggactcctt
1001 gaggttttaa aactagaacc actgacacca acgcaatacc tagtagtgga
1051 tatggcacat aggtatgtaa atttagaccg agatgatatc atgaattttt
1101 acagctcaaa atcacacttt aatagcacaa aaaatataaa agaaccaggg
1151 acatttaaat tgaatatgtc gtcactttca gtacaatcaa aatcactatt
1201 agagaaagta ggaaaaaaag gtgatcataa aggggtattc ggtacagtaa
1251 tcgatagtat agatatttca agccagctac agataaatga atgctcaaga
1301 aacattgaat ctattttatc acaacttgag atgaacatag gagaaactaa
1351 taccagactt gctgcacctg caaaaaccac aggtgtggat aatctattat
1401 caaagtttta tgagaatgaa atgggaaagt ttctgttaac aattatccgg
1451 aaaacagttg cttggcatat cggtcattta ataagagata tcactgaaag
1501 atttaattgt tcattcttgg gcttaaaaga tcaaaaatat tggtcaattc
1551 atgcatatga ccatggtggt gtaattttat ttatattgcc atcaaagtca
1601 ctagaagtag tagggtcata tatccgttat attattgtct ttaaaaaagg
1651 aatagggctt gttgatgaag aaaacttaga ttcttcttta gatattgatg
1701 gtgtaacttg gtatgtgaca aaagtaataa gtcttgattt aaaccgatta
1751 ttggccctaa atatatcatt tgaaaaggca cttcttgcta ccgcaacatg
1801 gttccaatat tatactgaag atcagggcca ctttcctctc caacatgcaa
1851 ttagatcagt atatgcattt cattttttgt taagtgtatg tcagaaaatg
1901 aaattgtgtg caatatttga caacttaaga tatctcatcc catcagttac
1951 agcattatat tctgggtttg aattgttaat agagaagttt tttgagaggc
2001 cctttaaaac ctgcttagaa gtatacatat acaatatagt taagtctttg
2051 ttaattagcc ttgcacaaaa caataaagtg agattctatt cgaaagttag
2101 actcttaggc cttacagtag atcagtctag tgttggtgca agtggggtat
2151 acccatcatt gatggcaaga gtagtttata aacattacag gagtctgata
2201 tcagaagcaa ctacatgttt tttccttttt gaaaaaggac tgcatggtaa
2251 tctgacggaa gaagcaaaaa tccatttaga aacagtagag tgggctaaca
2301 aatttgtaga gaaagaaaag aagttcggaa aatcaaagtt agaaaatggc
2351 tacaatattg cagaaatcgg cgggctgata aaagtagaac agcaattata
2401 ttgtcaggaa gttgttgagc tagctgctca ggaacttaat agctatttac
2451 atgctaagtc ccaagtgtta gccacaaaca tcttaaataa acactgggac
2501 aagccatatt tcagtcaaac aagaaatatt agtctaaaag gaatgtcagg
2551 aagtctccag gaagatggtc atctagcatc aagtgttaca ctaattgaag
2601 ccattcgtta cttgaataac tcacaaatta atcctacatt gattgatctt
2651 tatgagcaaa caaaagatca accagcccag gctagaattg tccgaaaata
2701 ccaacggaca gaagcagata gaggtttctt tataacaact ctccctacaa
2751 gggtgagact agagattata gaagattatt atgatgccat agccaaggtt
2801 gtaccagaag aatatatatc ttatggaggt gaaaggaaaa ttcttaatat
2851 ccagactgca ctagaaaaag cactgaggtg ggcatcaggt gaaagtgaaa
2901 tcattcaggc aaatggagac accattaagt tgaaaagaaa gttaatgtat
2951 gtaagtgctg atgccacaaa atggtcccca ggtgataact cagcaaaatt
3001 ccgttgtttc acacaagcat tatatgatgg attgacagat gataggttaa
3051 aaaactgtgt tgtggatgct ctaaggaata tttatgaaac agagttctat
3101 atgtctagaa aactccatag atacatagac gatatggatg tcctatcaga
3151 taatgtgaaa ggtttcttag agttttttga aagcaaagca tctagtaaga
3201 taagaggtaa ttggttacaa gggaacttga acaagtgttc atctttattt
3251 ggagttgcag tatcattatt atttaagcat gtgtggcaaa aattgtttcc
3301 agaccttgat tgtttttttg agtttgcaca ccattcagat gatgcgctat
3351 ttatctatgg ttacttagag cctttagatg atggtagtgc atggttcaag
3401 tatgtgtcgc aacaaataca agcaggagga ctccactggc attctgttaa
3451 taatgaaatg tggaaaagta tgtttaattt gcatgagtat atactattga
3501 tgggatctat tcgtgtctca ccaaaaaaga caacagtttc accaaccaat
3551 gctgaatttc tatcaacatt ttttgaaggc tgtgccgtct ctattccatt
3601 tattaagatc ttattaggtt cactatcaga tcttccagga ttaggttttt
3651 tcgatgattt agcagcagct caaagtcggt gtgtgaaggc gatggattta
3701 ggggcatcac ctcagcttgc tcaacttgca atagttttgt gcacaagtaa
3751 agttgaaagg ttatatggaa cagctgtagg tatggttaat aacccaactt
3801 catacttgaa agttcctagg aatcaagtac caattccttt aggaggtgat
3851 ggatcaatgt ctattatgga attagcaaca gcaggtatag gaatggctga
3901 taaaaatatt ttaaaaaaat catatcaatc ctttttacac acaaaacgag
3951 ataatgatag atatgtacta ggtcttttta aatttttaat ggggcttagc
4001 aatgaagtat ttcagcatga aaaactgggt gaattcagct tcattgggaa
4051 agtgcaatgg aaggtcttta cacctaaatc aaaatttgag ttttatgatc
4101 aattctctca gacttacata caaaactgga cgtctcaaca tccagcctat
4151 gattacataa tacctaggtc aagagacaat ttactagtat atctagtaag
4201 aaagcttaat gaccctagta ttgtaacagc catgactatg cagtcaccct
4251 tacaattaag gttcagaatg caagcaaaac agcacatgaa agtatgtcgg
4301 ttagaagggc agtgggttac atttagagaa gtcttagcag cagctgacag
4351 ttttgcatca acttataatc caacaaagga tgatatggat ctgtttcaaa
4401 cactagtaaa ctgtactttc tcaaaggaat atgcatggaa agatttttta
4451 aatgaagtta gatgtgaagt tgtaacatca aggcaaatac ataggtcaaa
4501 agtggctaga acctttacag tgagagagag agaccaagag atccaaaacc
4551 caataactgc agttattgga tataaatatg cacaaacagt tgaagaaatt
4601 agtgatgtgt tggacactgc catctttcca gattcattgt cagcagatct
4651 acaaactatg aaagagggtg tttatagaga attaggtctg gatataggaa
4701 taccagaagt actaaaacgg attgcaccat tactgtataa agcaggaaaa
4751 tcaagggttg taatagtaca aggaaatgta gaaggaactg cagaatcaat
4801 ttgtagttac tgggttaaat caatgtcttt agttaaaaca ataaaagtgc
4851 agcctaaaaa agaagtattg aaagctactt cattgtatgc agctaaggat
4901 aatgtgggct ttcaggttga cctagcagca tcaagattat gcattgaagt
4951 gtggaggtgg tgtaaagcta atgaacagaa tgtcattgaa tggttacaag
5001 cacttttttt tgaaaagcaa acattgatgg attggataaa cagatttagg
5051 caaaagggtg tagtcccagt agaaccagaa atacagtgtt taggtttgtt
5101 actgtatgac gttttaggag tgaagagctt attgcaaacc caggcaaata
5151 gaagagcata ttcaggaaaa cagtatgatg catactgtgt ccaaaattat
5201 aatgaggaaa agaaaattta tgaaggtgat ttaagagtga cattcaattt
5251 tggtttagac tgtgcaaggc tagaaatttt ctgggataaa caagagtaca
5301 tcctagaaac atcagttaca cagaaacatg tattaaaaat tatgatggag
5351 gaagttacaa aagaattact gagatgtggt atgagattta aaacagaaca
5401 tgtgacatcc acaaggagtc tagtgttgtt taagacagag agtggctttg
5451 aatggggaaa gccaaatgtc ccttgtattg tatataaaaa ttgtgcactg
5501 aggacaggtt taagaacaaa gaatacagta aataaagaat ttctgataac
5551 cacacaagct aatgggttta gggcaatagc tcaatttgat gaagacagcc
5601 cacgtttttt acttgcacat gcataccata gtttgaagga tgttagatat
5651 caggcagtta ctgcagtagg aaatgtgtgg ttccgcctac agaataacaa
5701 gttattttta aacccaatca ttagttctgg ccttttagaa aattttatga
5751 aaggtttgcc agcagctatt ccacctgcag catattcttt aatcatgaac
5801 aaagcaaaga tatctgttga tttatttatg ttcaatgaac tattacagaa
5851 tataaaccca aaaaacacat taaatttaga cggaatagaa gatacttcag
5901 aaggttatac aacagtcact acactatcga gtagaaattg gtcagaagaa
5951 atgagtatag tttcagaaga tgggattgat gaccaagaaa gttatacaat
6001 agatttggat gacattgatt ttgaagatgt caatttagaa gaagatatag
6051 aacacttctt gcaggatgaa tcagcttata ctggtgacct ccttattcaa
6101 acagaagata ctgatataaa gaagattcgc ggagtaatca gaattcttga
6151 cccaattcgc cttataaaaa gttgggtgtc aaagggacta gctattgata
6201 aagtatacaa ccctgttggg atcatattga tgacaagata tatgtcaaaa
6251 acatttgaat tcaacaagat acctttgtct ctattaaatc cttatgacct
6301 aacagagttt gagagtgttg tcaagggttg gggtgagtgt atttctggta
6351 gatttgaaga gattgatgag gaagctcatc gttatgttga aaatcgcaat
6401 ttgcagccag aggatgtgct ccctgattct ttattttctt tccattatgt
6451 cgatatatta ttaagaaggt tgtttcctaa ggattcttct tcatcatttt
6501 attaatcttg ccattttagt ttctttaagc agtgctcttt ttccggagca
6551 tactacta