Sequence of DPV Rockport virus

Rockport virus isolate MSB57412 segment S, complete sequence.

ACC No: HM015223

Dated: 2011-07-26 | Length: 1830 | CRC: 1518134151

                
ID   HM015223; SV 1; linear; viral cRNA; STD; VRL; 1830 BP.
XX
AC   HM015223;
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DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE   Rockport virus isolate MSB57412 segment S, complete sequence.
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KW   .
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OS   Rockport virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
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RN   [1]
RP   1-1830
RX   DOI; 10.1128/JVI.02450-10.
RX   PUBMED; 21632770.
RA   Kang H.J., Bennett S.N., Hope A.G., Cook J.A., Yanagihara R.;
RT   "Shared Ancestry between a Newfound Mole-Borne Hantavirus and Hantaviruses
RT   Harbored by Cricetid Rodents";
RL   J. Virol. 85(15):7496-7503(2011).
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RN   [2]
RP   1-1830
RA   Kang H.J., Bennet S.N., Hope A.G., Song J.-W., Cook J.A., Yanagihara R.;
RT   ;
RL   Submitted (19-MAR-2010) to the INSDC.
RL   Tropical Medicine and Medical Microbiology and Pediatrics, John A. Burns
RL   School of Medicine, University of Hawai`i at Manoa, 651 Ilalo, Honolulu, HI
RL   96813, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1830
FT                   /organism="Rockport virus"
FT                   /segment="S"
FT                   /host="Scalopus aquaticus"
FT                   /isolate="MSB57412"
FT                   /mol_type="viral cRNA"
FT                   /country="USA"
FT                   /collection_date="Oct-1986"
FT                   /db_xref="taxon:1001080"
FT   CDS             33. .1319
FT                   /codon_start=1
FT                   /product="nucleocapsid"
FT                   /protein_id="AEA11489.1"
FT                   /translation="MSHLKEIQEEITKHEQQLVTARQKLKDAERAVELDPDDVNKSTLQ
FT                   SRRTAVSALEGKLGEFKRQLADFVSSQKVIDRPVDPTGLEPDDYLKERSTLRYGNVIDV
FT                   NSIDLEEPSGQTADWQSICDYLVSFTLPIVLKALYMLSTRGRQTIKDNKGTRIRFKDDS
FT                   SFEEINGIRRPKHLYVSLPTAQSTMRADEITPGRFRTAVCGLYPAQVKARNIISPVMGV
FT                   IGFGFFVKDWAEKVESFLKSQCPFLKKTLELADQFMSTNHAYMIKRQDQLDDSKLQEIE
FT                   DLIDKMSTGDATLFTDIQSPHSVWVFAGAPDRCPPTCLYVAGMAELGAFFSILQDMRNT
FT                   IMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGVQLDQRIILLYMLEWGKDIVNHFHLGD
FT                   DMDPELRLIAQSLIDTKVKEISNQEPLKL"
XX
SQ   Sequence 1830 BP; 640 A; 283 C; 353 G; 554 T; 0 other;

hm015223 Length: 1830  26-JUL-2011  Type: N  Check: 5347  ..

       1  tagtagtaga ctccttggaa aactactgca aaatgagtca cttaaaggaa
      51  atacaggaag aaatcaccaa gcacgagcag caattggtta cagcaagaca
     101  gaagttgaag gatgcagaga gggctgtaga attggaccct gatgatgtca
     151  acaagagtac actacaaagt cggagaacag cagtttcagc attagaaggg
     201  aagttaggag aattcaagag acaactggca gactttgtgt caagtcaaaa
     251  agtaattgac cgtccggttg atcccacagg cctggaacca gatgactatc
     301  taaaggaacg ttccacatta cgttatggaa atgttattga tgttaacagc
     351  attgatttgg aagaaccaag tggtcaaaca gcagactggc agtcaatttg
     401  tgattacctt gtgagtttta ctctcccaat tgtcttgaag gcattataca
     451  tgttatccac acgtggccgt caaacaatta aggataataa agggacaaga
     501  attcgattta aggatgatag ttcatttgaa gaaataaatg gaatccgtag
     551  acctaaacat ttatatgttt ccctacctac agcacaatca acaatgagag
     601  ctgatgaaat tactccaggc cgtttcagga cagcagtctg tgggctttac
     651  cctgcacaag ttaaagctcg taatataata agtcctgtca tgggtgtcat
     701  agggtttgga ttctttgtga aggactgggc agaaaaggtt gagtcttttt
     751  taaagagcca atgcccattt ctgaaaaaaa cattggaact tgcagaccag
     801  ttcatgtcaa caaatcatgc atatatgatt aaaaggcaag accaattgga
     851  tgattcaaaa ttgcaagaga tagaagactt gattgataaa atgagcacag
     901  gtgatgctac gctgtttaca gatatacaat caccacattc tgtgtgggta
     951  tttgcagggg ctcctgatcg atgcccccca acatgtttgt atgttgcagg
    1001  aatggctgaa cttggagcat ttttttcaat tcttcaagat atgcgtaata
    1051  ctattatggc atctaagtca gtaggtactg cagaagaaaa actaaagaaa
    1101  aaatcagcat tctatcaatc atatctacgc cgcacacaat caatgggagt
    1151  ccaattagat cagaggataa tattattata catgctagaa tggggaaaag
    1201  atatagttaa ccactttcat cttggtgatg atatggaccc agagctgaga
    1251  ttgattgctc aaagtctcat tgacacaaag gtcaaggaga tctctaacca
    1301  agaacccctc aaactgtagt tagtaatatg tgtagatata agtataaatc
    1351  ataaaaaaat gatatttaga tataagataa ttgatagtag ctttcatata
    1401  tatactatag tataagttag tcgttgatag tagtgaattt ataagtacat
    1451  aatagatagg attatatagc aataagtaaa aagttattag cgtgacttat
    1501  gaaattatat actgtttatt ttagtatagt taactgtaat agtaataaaa
    1551  taagcattct tatagttaat ataattatgt tatcatactt aatacttgat
    1601  aatgaattta tggtagtagt ttatgaataa ttataaatga taagtaataa
    1651  ttacctttag taataatttg tatatatggg tgtacatttc attctgctta
    1701  tggttagatt tttactaatt tactaaccca caacttataa agtattatag
    1751  ttatgttctt tttgcacttt tattaacaca ctacctcaaa actttccttt
    1801  cttgattgct tttcaaggag tatactacta