Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate Pujol1TL3 segment M, complete sequence.
ACC No: HM015520
Dated: 2010-12-08 | Length: 4825 | CRC: 629359873
ID HM015520; SV 1; linear; genomic RNA; STD; VRL; 4825 BP.
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AC HM015520;
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DT 08-DEC-2010 (Rel. 107, Created)
DT 08-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate Pujol1TL3 segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4825
RX PUBMED; 20881087.
RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.;
RT "Evolutionary analysis of tomato Sw-5 resistance breaking isolates of
RT Tomato spotted wilt virus";
RL J. Gen. Virol. 92(1):210-215(2011).
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RN [2]
RP 1-4825
RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.;
RT ;
RL Submitted (20-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL COMAV-Universidad Politecnica de Valencia, Camino de Vera 14, Valencia
RL 46022, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .4825
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="Solanum lycopersicum"
FT /isolate="Pujol1TL3"
FT /mol_type="genomic RNA"
FT /country="Spain:Barcelona"
FT /collection_date="2003"
FT /proviral
FT /note="biotype: T: Tomato Sw-5 resistance breaking"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="Nsm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="Nsm"
FT /product="putative movement protein"
FT /protein_id="ADR66483.1"
FT /translation="MLTLFGNKRPSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIRIYPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCNQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSSLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1334. .4741)
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="precursor of glycoproteins Gn and Gc"
FT /protein_id="ADR66484.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP
FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTLGTRQIREEKSTIPISTEPATQKT
FT ISVLDLPNNCLNASSLKCEIKGVSTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVRLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKANKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA
FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQM
FT PMPMAQTTQCLSGCFYVPGCPFLVTNKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQNCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYVKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL
FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEILVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVALLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD
FT DELEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4825 BP; 1544 A; 873 C; 846 G; 1562 T; 0 other;
hm015520 Length: 4825 08-DEC-2010 Type: N Check: 5096 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaacta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa caagaggcct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac ttgctaaaca taatggcaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttaac caaagccatg
251 gacgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgctagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg aaagcaaaat gctaataagg ttatcaggat
451 ctatccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt atgccccact ataccaaacc ctacagggaa acttgtggtt
551 gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg
601 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt
651 ctattccgaa gatgaacaac accccagaaa actgttgcca gctgcatttg
701 atgtgcaacc aagaatacaa gaaaggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaagagtttt gcgattcacc cagagctgat aaagacaaaa
801 gttgtatggt tatacctcta aacagggcca ttagagctag gtctcaagca
851 ttcattgaag cctgcaagct gataattcct aaaggaaaca gcgagaagca
901 gattaaaaaa cagcttaaag aattgagctc aagtcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgacagtg ttgctcagtt atcctttgat
1001 gaaatatagt tttttaaaac acttatttaa gcttaaattt ctgtctattt
1051 tgcatttcta atccaaaaaa ctaaaacaaa aaacaaaaac aaaaaaagaa
1101 aaacaaacaa aaaaatcaaa ccaaaaaaca aaaacaaaat aaggctgaaa
1151 agccaaactt tggtccgaag actctttttg ttgttttttg tttatttgta
1201 ttttttgttt gttgtttttt gtttatttca tatttgcttt ttattagtca
1251 atgattgatt ctaaagattt ttatatatat aaaatcttgc taatatagaa
1301 gattgaatca aatttaatct gtgacaagca tcctcagaca aggtgagaga
1351 aatccatagg tggccttcgt ctcgtcattg tatctttcat taacataggg
1401 gctttgatct caagttcatc atcatcctct atcttggatc tagatttata
1451 agatttatgc tttacatatc ctttacaaat ggatgtcaga atagaacaga
1501 aataaatcac aaggaaaatg aatgcaataa gcagtgccac tctgatagta
1551 tcaaaaaatg agccaaagta acttgcaatg aaattgaatg gacttttaat
1601 ataatcccag aaaccccatg cagaagaatc agaattatat tgctgttctt
1651 catgagcata ctcatcattt tgatctatta tattctctgg ttcttctata
1701 ataacattat taaccaaaat ttccacagat atatccggat tgccttctgg
1751 atacagtgtc attttcttct tgtccgggtt ggctgaacaa aacattgtta
1801 tattgtattt attagatcct tttttaacag ccagctgata agtagataga
1851 gagcaagcgt ctatagaaat tgcagtagaa aatgtcaaat ctgagaaaaa
1901 ttctaaaatg caagataaac cttggccgca tagaagacag ccgttgcaat
1951 ttaagcttgt tgaagttatg gaaggttttt taggaacaac tttaaaaaga
2001 tcagatggaa gatcaactac aattttcagt ttccctaaac taaaagattt
2051 ttccaggaaa aaactagaga aatctttgaa actaacagga atatctgata
2101 tttgctctaa accagatcta aacctgtatg tgtcatatcc acatgtttta
2151 atagtgactg atttttttcc tattgctgca caatcccaag acatgtcatc
2201 tccttctaga gttttcttag taaaaatagg cactccatca tgggtcaatt
2251 gcggatgacc aaacattttc acaggatcat tcaagtttgc aatatttcca
2301 gagtaaatat ggctgtcagg tccatgagct attagttcac ctatagtgat
2351 accatcatta tgcaaatctg cctgtatatc agcttgaaac aatgtatttt
2401 cataaggaac ttcttcagta atccttgagc attgacctcc caaaatacca
2451 gaaatacaaa catctgctac tatagttgat ttgagcactg aataaattct
2501 atatgatttg tccatgtcat aaatatttcg acagaatccg catgtagcac
2551 cctcattaat tgcaaaacac caagcttctt cacatcccca ataagaagtt
2601 ggtgttatac aaaaatcttg gaaacctgtt aaagcttgat ttttcctgca
2651 agtgtcgcag tttcctgtac aagtggaata aaaatccgta tgggtgcttt
2701 ggatgggagc tgttgtatat ttttctgaca cttcataatg aatccccaca
2751 cttttgacat aaatcacaaa ttttttggct gtttctgagg tcttgtcatt
2801 tagcatgaat atagttcctc ctcctcccaa aagagattgt tctatcatat
2851 atctatattt cccgtctaca acagaatcaa agattaatga ttgcctgggc
2901 aggatgttct ctggtatgct tgtttcattt ttgtctaaag agtctcctgc
2951 aatcattcca gaaattttgt ctgtacgatt ataggaatct attataccat
3001 ttctcaatct cttagcctca tacagaccaa ctgatgttaa ccctaaagag
3051 cttcctgtat aatccgaaaa cccattgtac aaaggtttgt tctgaaataa
3101 atctaggtat tcgcaaccta atctgcattt tataagatta tcaatagatg
3151 ggcgtgcaat gcaattctgg ttctctatgc aatcattagg accttctata
3201 acaatattag tgccaaagat actttctatg atcttgtctt cttttacatt
3251 gcagtaacat tgatcttttt cagggcattt ctcaaatttg tttgtaacca
3301 aaaatggaca gcctggaaca taaaagcatc cactcaaaca ttgggttgtt
3351 tgagccatag gcatgggcat ctgagacaaa atgactaaac ctatcaaaat
3401 ttcggtcaca aattttagca aactcaagct cagcttagtg ttcactatta
3451 gatggaacca ttccatgcta gtccacttat gtttgttgta gtcatgatct
3501 gcctctttgg acaatatggg acactctgaa gaatgctctt ttgaagcttt
3551 gcttttgttg caaatgcaga ctttagtaca ctcatgtgtg actatgcaca
3601 aattgccgca gttagaacat ttaaatggga aatatttcca taagcaattt
3651 atgagcaata agacagggta tgtgatcaag cccataagat cataccagag
3701 aaagagaggt ttagtcgtct tgttcactaa ccatcggata gggaaataga
3751 tcaacaaagc tatcaatatc aatcttatcc aagaaaaatt gatgcaggct
3801 gtttgcttat aaatactttt tgaatatttg attatgcaat ctctgactct
3851 tttgtttgct tttggtattt tagctgattt gtcaccgcac aagagattgt
3901 gttcaccatc caacatttcc tcggtaaaag tgatacttgc tgatccagaa
3951 aaagctataa ccttgtgttc cacattttca ccaggttttt ttatcaaata
4001 acccatgatc ttctcagggc tagtgatgct cacagtatag ggatttgcaa
4051 agtttgattt agttattttg cagtcaccag ataaccttac agtttgtaat
4101 gatactgttc cattagtggg gtatgagttg taagttatag gataattatc
4151 ttgtgtcagg ctttctgaaa tgaagaattt tgttcctact gaaaaatgtc
4201 ttttgttgtc aagtttggta ataggaataa ctgggacttt ggagaatctc
4251 tttggcaaat ttaaagaatt atcacatttt tctaaacctt ctgctgaatc
4301 agaaacacag gaatatatga caccattgtt ttcaacttga taataaacat
4351 tataagtaga tacccctttt atctcacatt ttaatgagga agcattcaag
4401 cagttgttgg gaagatccaa aacagagatt gttttttgcg ttgctggctc
4451 agtggaaata gggatggttg atttttcttc tcgtatctgg cgggttccaa
4501 gagtccgaga ttctagcatc agattagtta aagtctccaa gatagcttcg
4551 cgttgaatcg atgcagcagt gggtacctca ttctcagcag aatcatcata
4601 aatctcagga tgatctccac gaattatttc tactttagca tctgtggctc
4651 tgaagatcaa gaatgccaac aaaacagaac tcagggcaat tgtgaaaaga
4701 ctcactttta ccactagttc tagtagtttt agaattctca tcttagatgt
4751 ctacccagat tacaatggtt gtgtgattaa tttcaagatg tctggattaa
4801 ggtttttgtt tgcactgatt gctct