Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate Sala1TL3 segment M, complete sequence.
ACC No: HM015521
Dated: 2010-12-08 | Length: 4826 | CRC: 1052908938
ID HM015521; SV 1; linear; genomic RNA; STD; VRL; 4826 BP.
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AC HM015521;
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DT 08-DEC-2010 (Rel. 107, Created)
DT 08-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate Sala1TL3 segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4826
RX PUBMED; 20881087.
RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.;
RT "Evolutionary analysis of tomato Sw-5 resistance breaking isolates of
RT Tomato spotted wilt virus";
RL J. Gen. Virol. 92(1):210-215(2011).
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RN [2]
RP 1-4826
RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.;
RT ;
RL Submitted (20-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL COMAV-Universidad Politecnica de Valencia, Camino de Vera 14, Valencia
RL 46022, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .4826
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="Solanum lycopersicum"
FT /isolate="Sala1TL3"
FT /mol_type="genomic RNA"
FT /country="Spain:Barcelona"
FT /collection_date="2003"
FT /proviral
FT /note="biotype: T: Tomato Sw-5 resistance breaking"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="Nsm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="Nsm"
FT /product="putative movement protein"
FT /protein_id="ADR66485.1"
FT /translation="MLTLFGNKRPSKSAGKDEGPLVSLANHNGNVEVSKPWSSSDEKLA
FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKIYPTWDSRKQYMMISRIVIWVFPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1335. .4742)
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="precursor of glycoproteins Gn and Gc"
FT /protein_id="ADR66486.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP
FT EIYDDSAENGVPTAASIQREAILETLTNLMLESRTLGTRQIREEKSTIPISTEPATQKT
FT ISVLELPNNCLNASSLKCGIKGISTYNVYYQVENNGVIYFCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILVALLIYFPIRWLVN
FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA
FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTNKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQNCTARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYVKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL
FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEILVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD
FT DELEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4826 BP; 1548 A; 876 C; 840 G; 1562 T; 0 other;
hm015521 Length: 4826 08-DEC-2010 Type: N Check: 2603 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaacta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa caagaggcct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac ttgctaacca taatggcaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttaac caaagccatg
251 gacgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgctagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg aaagcaaaat gctaataagg ttatcaagat
451 ctatccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt attccccact ataccaaacc ctacagggaa acttgtggtt
551 gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg
601 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt
651 ctattccgaa gatgaacaac accccagaaa actgttgcca gctgcatttg
701 atgtgcagcc aagaatacaa gaaaggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaagagtttt gcgattcacc cagagctgat aaagacaaaa
801 gttgtatggt tatacctcta aacagggcca ttagagctag gtctcaagca
851 ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca
901 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgacagtg ttgctcagtt atcctttgat
1001 gaaatatagt tttttaaaaa cacttattta agcttaaatt tctgtctatt
1051 ttgcatttct aatccaaaaa accaaaacaa aaaacaaaaa caaaaaaaga
1101 aaaacaaaca aaaaaatcaa accaaaaaac aaaaacaaaa taaggctgaa
1151 aagccaaact ttggtccgaa gactcttttt gttgtttttt gtttatttgt
1201 attttttgtt tgttgttttt tgtttatttc atacttgctt tttattagtc
1251 aatgattgat tctaaagatt tttatatata taaaatcttg ctaatataga
1301 agattgaatc aaatttaatc tgtgacaagc atcctcagac aaggtgagag
1351 aaatccatag gtggccttcg tctcgtcatt gtatctttca ttaacatagg
1401 ggctttgatc tcaagttcat catcatcctc tatcttggat ctagatttat
1451 aagatttatg ctttacatat cctttacaaa tggatgtcag aatagaacaa
1501 aaataaatca caaggaaaat gaatgcaata agcagtacca ctctgatagt
1551 atcaaaaaat gagccaaagt aacttgcaat gaaattgaat ggacttttaa
1601 tataatccca gaaaccccat gcagaagaat cagaattata ttgctgttct
1651 tcatgagcat actcatcatt ttgatctatt atattctctg gttcttctat
1701 aataacatta ttaaccaaaa tttccacaga tatatccgga ttgccttctg
1751 gatacagtgt cattttcttc ttgtccgggt tggctgaaca aaacattgtt
1801 atattgtatt tattagatcc ttttttaaca gccagctgat aagtagatag
1851 agagcaagcg tctatagaaa ttgcagtaga aaatgtcaaa tctgagaaaa
1901 attctaaaat gcaagataaa ccttggccgc atagaagaca gccgttgcaa
1951 tttaagcttg ttgaagttat ggaaggtttt ttaggaacaa ctttaaaaag
2001 atcagatgga agatcaacta caattttcag tttccctaaa ctaaaagatt
2051 tttccaggaa aaaactagag aaatctttga aactaacagg aatatctgat
2101 atttgctcta aaccagatct aaacctgtat gtgtcatatc cacatgtttt
2151 aatagtgact gatttttttc ctattgctgc acaatcccaa gacatgtcat
2201 ctccttctag agttttctta gtaaaaatag gcactccatc atgggtcaat
2251 tgcggatgac caaacatttt cacaggatca ttcaagtttg caatatttcc
2301 agagtaaata tggctgtcag gtccatgagc tattagttca cctatagtga
2351 taccatcatt atgcaaatct gcctgtatat cagcttgaaa caatgtattt
2401 tcataaggaa cttcttcagt aatccttgag cattgacctc ccaaaatacc
2451 agaaatacaa acatctgcta ctatagttga tttgagcact gaataaattc
2501 tatatgattt atccatgtca taaatatttc gacagaatcc gcatgtagca
2551 ccttcattaa ttgcaaaaca ccaagcttct tcacatcccc aataagaagt
2601 tggtgttata caaaaatctt ggaaacctgt taaagcttga tttttcctgc
2651 aagtgtcgca gtttcctgta caagtggaat aaaaatccgt atgggtgctt
2701 tggatgggag ctgttgtata tttttctgac acttcataat gaatccccac
2751 acttttgaca taaatcacaa attttttggc tgtttctgag gtcttgtcat
2801 ttagcatgaa tatagttcct cctcctccca aaagagattg ttctatcata
2851 tatctatatt tcccgtctac aacagaatca aagattaatg attgcctggg
2901 caggatgttc tctggtatgc ttgtttcatt tttgtctaaa gagtctcctg
2951 caatcattcc agaaattttg tctgtacgat tataggaatc tattatacca
3001 tttctcaatc tcttagcctc atacagacca actgatgtta accctaaaga
3051 gcttcctgta taatccgaaa acccattgta caaaggtttg ttctgaaata
3101 aatctaggta ttcgcaacct aatctgcatt ttataagatt atcaatagat
3151 gggcgtgcag tgcaattctg gttctctatg caatcattag gaccttctat
3201 aacaatatta gtgccaaaga tactttctat gatcttgtct tcttttacat
3251 tgcagtaaca ttgatctttt tcagggcatt tctcaaattt gtttgtaacc
3301 aaaaatggac agcctggaac ataaaagcat ccactcaaac attgggttgt
3351 ttgagccata gacatgggca tctgagacaa aatgactaaa cctatcaaaa
3401 tttcggtcac aaattttagc aaactcaagc tcagcttagt gttcactatt
3451 agatggaacc attccatgct agtccactta tgtttgttgt agtcatgatc
3501 tgcctctttg gacaatatgg gacactctga agaatgctct tttgaagctt
3551 tgcttttgtt gcaaatgcag actttagtac actcatgtgt gactatgcac
3601 aaattgccgc agttagaaca tttaaatggg aaatatttcc ataagcaatt
3651 tatgagcaat aagacagggt atgtgatcaa gcccataaga tcataccaga
3701 gaaagagagg tttagtcgtc ttgttcacta accatcggat agggaaatag
3751 atcaacaaag ctaccaatat caatcttatc caagaaaaat tgatgcaggc
3801 tgtttgctta taaatacttt ttgaatattt gattatgcaa tctctgactc
3851 ttttgtttgt ttttggtatt ttagctgatt tgtcaccgca caagagattg
3901 tgttcaccat ccaacatttc ctcggtaaaa gtgatacttg ctgatccaga
3951 aaaagctata accttgtgtt ccacattttc accaggtttt tttatcaaat
4001 aacccatgat cttctcaggg ctagtgatgc tcacagtata gggatttgca
4051 aagtttgatt tagttatttt gcagtcacca gataacttta cagtttgtaa
4101 tgatactgtt ccattagtgg ggtatgagtt gtaagttata ggataattat
4151 cttgtgtcag gctttctgaa atgaagaatt ttgttcctac tgaaaaatgt
4201 cttttgttgt caagtttggt aataggaata actgggactt tggagaatct
4251 ctttggcaaa tttaaagaat tatcacattt ttctaaacct tctgctgaat
4301 cagaaacaca gaaatatatg acaccattgt tttcaacttg ataataaaca
4351 ttataagtag atatcccttt tatcccacat tttaatgagg aagcattcaa
4401 gcagttgttg ggaagctcca aaacagagat tgttttttgc gttgctggct
4451 cagtggaaat agggatggtt gatttttctt ctcgtatctg gcgggttcca
4501 agagtccgag attctagcat cagattagtt aaagtctcca agatagcttc
4551 gcgttgaatc gatgcagcag tgggtacccc attctcagca gaatcatcat
4601 aaatctcagg atgatctcca cgaattattt ctactttagc atctgtggct
4651 ctgaagatca agaatgccaa caaaacagaa ctcagggcaa ttgtgaaaag
4701 actcactttt accactagtt ctagtagttt tagaattctc atcttagatg
4751 tctacccaga ttacaatggt tgtgtgatta atttcaagat gtctggacta
4801 aggtttttgt ttgcactgat tgctct